PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

55764

Common Name

MICPUCDRAFT_55764

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

bHLH

Protein Properties

Length: 345aa MW: 37384.9 Da PI: 10.15

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
55764	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.7e-13	123	181	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksL 54 r++h + E++RRdriN ++eLr l+P ++ +++ sK ++L+ +++ I+ L 55764 123 RVSHGASEKQRRDRINAMIDELRCLVPAGGeeqdaaQGEDRRRSKFSVLQDTINLIRTL 181 899***********************555999999****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.795	121	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-12	122	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-11	123	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-13	123	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-8	123	186	No hit	No description
SMART	SM00353	1.4E-8	127	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.29E-4	245	318	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MTISNQGGGR PAGKVNVAGA VSGDTKGSGG AQHVKEALNT AVEFGVNGLA RAHFVSTTSL 60 QFQPSTRYIS YTSDSERVEK TLNSSKQDKV VNPLIEKNLS SKPTVRSSVS PVRGDASDGY 120 GTRVSHGASE KQRRDRINAM IDELRCLVPA GGEEQDAAQG EDRRRSKFSV LQDTINLIRT 180 LTVTVEKQRR RIAKLSSSGG GDFGVDFQPE HVPHTRTSSP STDSMHTKDG MIKFSVDLRN 240 DNCYIKFHTI DRRGLLPDLM SALHELPMDI TRANITTKVD DAGRMWVTDI FELKIGGIRG 300 GLPRICSGEV KRRLRNALVA STRAFEGEDG SGSKKRKEND NGGG*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MTISNQGGGR PAGKVNVAGA VSGDTKGSGG AQHVKEALNT AVEFGVNGLA RAHFVSTTSL  60
QFQPSTRYIS YTSDSERVEK TLNSSKQDKV VNPLIEKNLS SKPTVRSSVS PVRGDASDGY  120
GTRVSHGASE KQRRDRINAM IDELRCLVPA GGEEQDAAQG EDRRRSKFSV LQDTINLIRT  180
LTVTVEKQRR RIAKLSSSGG GDFGVDFQPE HVPHTRTSSP STDSMHTKDG MIKFSVDLRN  240
DNCYIKFHTI DRRGLLPDLM SALHELPMDI TRANITTKVD DAGRMWVTDI FELKIGGIRG  300
GLPRICSGEV KRRLRNALVA STRAFEGEDG SGSKKRKEND NGGG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003056590.1	0.0	predicted protein
TrEMBL	C1MLM2	0.0	C1MLM2_MICPC; Predicted protein
STRING	XP_003056590.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3455	10	13

Link Out ? help Back to Top
Phytozome	55764
Entrez Gene	9681603

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]