PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 55785
Common NameMICPUCDRAFT_55785
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB
Protein Properties Length: 531aa    MW: 57940.2 Da    PI: 7.4529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
55785genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-12328372348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +W + Ed+l   +v+++G++ Wk+Ia ++  ++t kq+  rw++yl
            55785 328 SWLPSEDDLVRTLVTEHGPRKWKLIATRLK-TKTQKQVYARWRDYL 372
                      699**************************9.*************97 PP
2Myb_DNA-binding36.61e-11379420245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++W+ +E+ +l+++ +  G+  W+  ar m+ gR+++ +k+r++
            55785 379 KPWSRDEQTRLIELQAHVGNQ-WAVLARLMP-GRSPNAIKNRFH 420
                      69*****************99.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.576321376IPR017930Myb domain
SuperFamilySSF466891.42E-21324419IPR009057Homeodomain-like
SMARTSM007173.3E-10325374IPR001005SANT/Myb domain
PfamPF002492.2E-11328372IPR001005SANT/Myb domain
CDDcd001676.27E-10328372No hitNo description
Gene3DG3DSA:1.10.10.604.9E-17328379IPR009057Homeodomain-like
PROSITE profilePS5129413.175377427IPR017930Myb domain
SMARTSM007171.1E-10377425IPR001005SANT/Myb domain
PfamPF002494.4E-10379420IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-15380425IPR009057Homeodomain-like
CDDcd001673.01E-8380423No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDSILQETVR AGKAEKTVLP KFVRPAHACR EVKRDATTIS HEFGRGLIND TKSTVTTTEE  60
HHDCDKEDGS RNYSTGYFNH RELSKLFSIV RGIPFPSELS TAEGSTDVSK FSLPMLSSVT  120
ATSVTSRKLT LPRTITKTVE AGIPLAAHGC SNSLRHGDLK TVGALGTAVI LSSLNTDSST  180
LDILQHSKRS TDLKSADYLQ CPGPAAAQIY ATQLHLEETG SKVQKMVAVA DIEIPEPESK  240
GNGIKANTVN ITRTDTVRSG IRDAEPKVNV PVLLSISPPM EKAANNFGVP LPTELATAFS  300
GDFEMMNAEG SHAEGSYAFE ANRSRSRSWL PSEDDLVRTL VTEHGPRKWK LIATRLKTKT  360
QKQVYARWRD YLQPGLTTKP WSRDEQTRLI ELQAHVGNQW AVLARLMPGR SPNAIKNRFH  420
ATKRKLERRS KKEADTIKPV ANDSTRSSED IPKKYGHLDA VKVSSGIPSS AIPSSELEMD  480
DDESLALEGL LLADTPTALT SLREREDADN QFDSATAPND ATSGMAVPTE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-203294257103C-Myb DNA-Binding Domain
1msf_C7e-203294257103C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056601.10.0predicted protein
TrEMBLC1MLP10.0C1MLP1_MICPC; Predicted protein
STRINGXP_003056601.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.16e-24myb domain protein 69
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]