PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

56045

Common Name

MICPUN_56045

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 178aa MW: 17682.1 Da PI: 4.6414

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56045	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	153	175	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C ++r G C G+ C++ H+ 56045 153 TVCIEYSRLGGCALGAACPYDHP 175 68********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.16	149	177	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.1E-5	152	175	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MTEPKGALGT APDVAPIGTG SAALKQAPAV AQAPAAVMHP GGFAPQGAYP GVPGGYPEID 60 LEQVPDDGSF NPLLDPNYTA LQLALAQAVE RDPEGATAFY LELCDKGPRA MVRRVVDGIV 120 PGAPRVPPVV GMPAGGGVGG SASTGLPRRP GSTVCIEYSR LGGCALGAAC PYDHPTG*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001323	0.0	CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002499634.1	1e-121	predicted protein
TrEMBL	C1DY65	1e-120	C1DY65_MICCC; Uncharacterized protein
STRING	XP_002499634.1	1e-121	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15552	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.1	4e-07	zinc finger nuclease 3

Link Out ? help Back to Top
Phytozome	56045
Entrez Gene	8241307

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]