PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56115
Common NameMICPUN_56115
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family bZIP
Protein Properties Length: 210aa    MW: 22896.7 Da    PI: 10.2254
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56115genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.15.8e-11127185159
             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
             eke+kr +r+ +NR++A+  R+RKka++  Le++  ++e+++ +L  ++++l+ e   l
   56115 127 EKERKRLKRLLRNRVSAQQARERKKAYMSTLEDERRNMETKMAELEAKINTLERENFML 185
             89**************************************************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-10127191IPR004827Basic-leucine zipper domain
PfamPF001704.5E-10127187IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795129192IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-14131191No hitNo description
SuperFamilySSF579591.05E-11131189No hitNo description
CDDcd147042.96E-15132182No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDSMFSQFHN GGHMPGQDGL PRHFMADMGD LSGAPGFPPG APLFGSAMAA AADKPTAAQA  60
AAGRLQRASA RQAAKAAMTQ KRKAQAQRKR PAAAEADEDD SDDGEDASVP TKPHEIAKSK  120
YNHVEDEKER KRLKRLLRNR VSAQQARERK KAYMSTLEDE RRNMETKMAE LEAKINTLER  180
ENFMLRQVVK NATQGKTGGK GGQDHEVPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128135ERKRLKRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499597.11e-151bZIP transcription factor
TrEMBLC1DXZ61e-150C1DXZ6_MICCC; BZIP transcription factor
STRINGXP_002499597.11e-151(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46161010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-13bZIP family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]