PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56416
Common NameMICPUN_56416
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 470aa    MW: 51410.1 Da    PI: 9.437
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56416genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.36.8e-15283309127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              yktelCr + +tGtC+yG++C+F+Hg+
    56416 283 YKTELCRSWEETGTCRYGAKCQFSHGR 309
              9************************96 PP
2zf-CCCH43.55.4e-14321345125
              --S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
              ykte Cr+fa++GtC+yG rC+F+H
    56416 321 YKTEVCRTFAQNGTCPYGTRCRFIH 345
              9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.2E-19279315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10279314IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-10282309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.774282310IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-12283309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-15316347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-9317347IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-9320347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76320348IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10321345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEPFATAPSQ RHLPFGAASN VLGAAAPPFV PRDHYHHHHH QQQQQPLHPQ VILTGGQTQQ  60
QPLGAKSAPA TPYSHGMHAL PVSPLTGCVS IPGSPMRPLQ SGQQPSVSDY FHRPKDLGFA  120
DRGYFPSPRR PQNLPQSFQQ IEIQPTQPGA GIHPFVDHHH QQQQQQHQHQ HELHHELHHR  180
HQHVPPWLAP TSPLQNPPSA GSSLAPSPLA SPRTGGVQRT GGGPPSPSQN LALAGSGTPA  240
DPLFHRLLRQ AHGQQWEQSR EQQWEQYQSP VSCPPCSQQH SLYKTELCRS WEETGTCRYG  300
AKCQFSHGRD ELRPVLRHPK YKTEVCRTFA QNGTCPYGTR CRFIHQRAPT KSVLGTLVAG  360
AHAVIPSDWR PEGRKGSQGN GRDGSGTGGG GSERGGRRDS EDAPRRLPIF QRIAADEEDE  420
GDEKEREALI ARTRKRIPTP RVFPGLSGSA AKPPSAATGP PRFDIDGSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-25283346467Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499452.10.0predicted protein
TrEMBLC1DZU60.0C1DZU6_MICCC; Uncharacterized protein
STRINGXP_002499452.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-25C3H family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]