PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56453
Common NameMICPUCDRAFT_56453
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family YABBY
Protein Properties Length: 124aa    MW: 12980.4 Da    PI: 10.8341
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56453genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY28.93.6e-094698113164
  YABBY 113 ppvirPPekrq.rvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164
            +p+ +  ekr  r+P+a+n f+k  +  +ka+ P +  +e f+  a  W   P
  56453  46 KPIKKKKEKRApRAPTAFNLFMKKAVAEVKAETPGMNPKEIFAKCAAKWKTSP 98 
            467888999966**********************************99*8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF470951.01E-1144102IPR009071High mobility group box domain
CDDcd000847.15E-75799No hitNo description
Gene3DG3DSA:1.10.30.109.2E-957102IPR009071High mobility group box domain
PfamPF005051.4E-957102IPR009071High mobility group box domain
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MSDSAKLAPL FAQIGEACIE ISKVFAGGVV LGKRGASGEL VDDNGKPIKK KKEKRAPRAP  60
TAFNLFMKKA VAEVKAETPG MNPKEIFAKC AAKWKTSPEN PKSGLGSLGA AKKMTPGKKP  120
VKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111122KKMTPGKKPVKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003057368.11e-81predicted protein
TrEMBLC1MMA33e-80C1MMA3_MICPC; Predicted protein
STRINGXP_003057368.15e-81(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP925545
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]