PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56696

Common Name

SELMODRAFT_56696

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 260aa MW: 28540.7 Da PI: 10.7632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56696	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	83	106	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H 56696 83 YECNLCGRKCKTNLDLKKHFKQlH 106 99*****************98777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.1E-5	82	109	No hit	No description
SMART	SM00355	0.0086	83	106	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.115	83	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	106	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
ATPSRTVSIF WDLDNKPPAL APFTVAMRLK SAAGAFGCVR ETIALANRHA FIHIPEWVRE 60 QRRERKILDI LEKTGRIQPP APYECNLCGR KCKTNLDLKK HFKQLHERER GKRIARLNQL 120 TGKRRAKFQS AIAAKEQRYR AACSGGMGTA APAAAGYGLA AELRRAGVSV RTVSDKPDAA 180 DEALKRRMEA TIFGAEGSGG SAGENCVCLV SDDSGFGGVL RDARRRRART VVIGSSGSLR 240 RYSDAWLSWE DVMSGLGQRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002979111.2	0.0	uncharacterized protein LOC9659766
TrEMBL	D8S6I2	0.0	D8S6I2_SELML; Uncharacterized protein (Fragment)
STRING	EFJ20068	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3048	14	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	9e-62	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	56696
Entrez Gene	9659766

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]