PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56710

Common Name

MICPUN_56710

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

C3H

Protein Properties

Length: 427aa MW: 46138.4 Da PI: 6.0358

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56710	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	19	40	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lCr++ar G C yGd C+F H 56710 19 ALCRHWARRGRCDYGDGCRFRH 40 79******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.554	15	43	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.8E-4	16	42	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	18	42	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-5	19	40	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-7	19	41	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF53335	2.25E-5	80	142	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	1.9E-4	83	142	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MSREGEAPDP PGPLPATPAL CRHWARRGRC DYGDGCRFRH ERVPGDDADA DDPRVSAMDG 60 RREGATRFGR RHHARNRNKA GDFRRWLVAT FGFETLASGA GVLDVAGGKG ELAFELRNLS 120 GIPVTVVDPR PMRLERYVRR FRSGMYHRNQ SPAAAKLRRP LDSTLAAPDH LRMFLHRGVF 180 DPARSDGERR LAAIESHRLS HATRWSRRGL VDGESAPGDG DGDGESAPGD GVRDGANLDE 240 AYRIPGEPVR HATMFSEIPR RRDPDADDVE SDVYADVEAD VEADVDDPDA AAMTPVAMDA 300 SATADACERV FRDCSVVVGL HPDQATDAAV DLALAFGKPF AVVPCCTYSR DFPHRRLPPG 360 PGRPRGGGAV TTHAHLVEYL LAKAAPGTTI ERDELPFEGK NVVVYSLGDG GSELLCRAVD 420 GLGVGE*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MSREGEAPDP PGPLPATPAL CRHWARRGRC DYGDGCRFRH ERVPGDDADA DDPRVSAMDG  60
RREGATRFGR RHHARNRNKA GDFRRWLVAT FGFETLASGA GVLDVAGGKG ELAFELRNLS  120
GIPVTVVDPR PMRLERYVRR FRSGMYHRNQ SPAAAKLRRP LDSTLAAPDH LRMFLHRGVF  180
DPARSDGERR LAAIESHRLS HATRWSRRGL VDGESAPGDG DGDGESAPGD GVRDGANLDE  240
AYRIPGEPVR HATMFSEIPR RRDPDADDVE SDVYADVEAD VEADVDDPDA AAMTPVAMDA  300
SATADACERV FRDCSVVVGL HPDQATDAAV DLALAFGKPF AVVPCCTYSR DFPHRRLPPG  360
PGRPRGGGAV TTHAHLVEYL LAKAAPGTTI ERDELPFEGK NVVVYSLGDG GSELLCRAVD  420
GLGVGE*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500396.1	0.0	predicted protein
TrEMBL	C1E115	0.0	C1E115_MICCC; Uncharacterized protein
STRING	XP_002500396.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP348	8	11

Link Out ? help Back to Top
Phytozome	56710
Entrez Gene	8242028

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]