PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56793
Common NameSELMODRAFT_46742, SELMODRAFT_56793, WRKY_20, WRKY_6
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WRKY
Protein Properties Length: 287aa    MW: 31763.9 Da    PI: 10.0214
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56793genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33109166260
            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
            dDgynWrKYGqK vkgse+prsYY+Ct+ +Cp+kkkvers  d++v+ei+YegeHnh+k
  56793 109 DDGYNWRKYGQKLVKGSENPRSYYKCTYVNCPMKKKVERSP-DGQVTEIVYEGEHNHPK 166
            8****************************************.***************85 PP
2WRKY105.62.6e-33224282159
            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
            ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+ +dp++v++tYeg+Hnh+
  56793 224 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNLGCPVRKHVERACDDPRAVITTYEGKHNHD 282
            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.96103167IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-29106167IPR003657WRKY domain
SuperFamilySSF1182903.66E-26107167IPR003657WRKY domain
SMARTSM007742.0E-37108166IPR003657WRKY domain
PfamPF031061.0E-26109165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-38209284IPR003657WRKY domain
SuperFamilySSF1182902.75E-30216284IPR003657WRKY domain
PROSITE profilePS5081137.838219284IPR003657WRKY domain
SMARTSM007742.7E-39224283IPR003657WRKY domain
PfamPF031061.4E-26225282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
RFKSMPPSRL PIPRAPCVTI PPGLSPTTLL DSPVLLSTSH PEPSPTTGTF PLPPLLSGNG  60
IKPGENSKVK EQDGGGSGFE PQKQSPTQPD QNRTTSASPP PPPAERSSDD GYNWRKYGQK  120
LVKGSENPRS YYKCTYVNCP MKKKVERSPD GQVTEIVYEG EHNHPKPQPT RRMAMSAANL  180
MSKSLSVRNG STDKTEVGRN HPPIPKNVRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG  240
NPHPRSYYKC TNLGCPVRKH VERACDDPRA VITTYEGKHN HDVPAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-39109285878Probable WRKY transcription factor 4
2lex_A1e-39109285878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024520993.11e-133probable WRKY transcription factor 3
RefseqXP_024539636.11e-133probable WRKY transcription factor 3
SwissprotQ9C5T31e-93WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLD8S6Z90.0D8S6Z9_SELML; Uncharacterized protein WRKY_20 (Fragment)
STRINGEFJ074620.0(Selaginella moellendorffii)
STRINGEFJ200230.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.13e-86WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]