PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56817

Common Name

MICPUN_56817

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

C3H

Protein Properties

Length: 484aa MW: 52414.8 Da PI: 10.5603

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56817	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.6e-06	212	225	13	26
S--TTTTT-SS-SS CS zf-CCCH 13 GtCkyGdrCkFaHg 26 G Ck+Gd C+F H+ 56817 212 GKCKFGDECQFKHP 225 99***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	8.63E-5	204	226	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.136	204	227	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-5	205	229	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MGSSVNAEKK AKKEKKDKKD TKDKKEAKSD AGKKDASKKT AAAAAQPMGK AAKKKALLDW 60 FHGALKGDTD GARADFLKAR DYVAVANVIR KHARDPKLKG AHADAIKLLD NKGHFLNIVD 120 VVVKDGAADA STHWDKIKAH HRAKFEKAGG KDGVAEKKRA AREAKEAFKV LQKERAEREA 180 KQKELAADRK EYRQKMDEVR LKGACLDWCN LGKCKFGDEC QFKHPDELKG TLVALANKIK 240 AKDVGGKKGK EREETERRKK RKAAKKEKER DGEGGGDSDS DADDGGGGDS ESEDSFDRAA 300 QAEDEYDSED FDSDLDVDVD KSTGAKTKRK KRKDKVLSVL PGDDGSDSDG DDEDLPRMVR 360 LRKQKQREEA EWAKAERAAK KAKQAKILEK VKAARAAKGL EMPKRQGSRD RSGGRGGGGR 420 GGGGGRGGRG GRGGRGGRGG RGGRGEKRSF DGQASGEKRK KKPRHADGRH AKHAAAHAAR 480 TAA*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MGSSVNAEKK AKKEKKDKKD TKDKKEAKSD AGKKDASKKT AAAAAQPMGK AAKKKALLDW  60
FHGALKGDTD GARADFLKAR DYVAVANVIR KHARDPKLKG AHADAIKLLD NKGHFLNIVD  120
VVVKDGAADA STHWDKIKAH HRAKFEKAGG KDGVAEKKRA AREAKEAFKV LQKERAEREA  180
KQKELAADRK EYRQKMDEVR LKGACLDWCN LGKCKFGDEC QFKHPDELKG TLVALANKIK  240
AKDVGGKKGK EREETERRKK RKAAKKEKER DGEGGGDSDS DADDGGGGDS ESEDSFDRAA  300
QAEDEYDSED FDSDLDVDVD KSTGAKTKRK KRKDKVLSVL PGDDGSDSDG DDEDLPRMVR  360
LRKQKQREEA EWAKAERAAK KAKQAKILEK VKAARAAKGL EMPKRQGSRD RSGGRGGGGR  420
GGGGGRGGRG GRGGRGGRGG RGGRGEKRSF DGQASGEKRK KKPRHADGRH AKHAAAHAAR  480
TAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	259	KGKEREETERRKK
2	328	333	RKKRKD
3	328	334	RKKRKDK
4	414	425	RGGGGRGGGGGR
5	417	424	GGRGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500888.1	0.0	predicted protein
TrEMBL	C1E1C1	0.0	C1E1C1_MICCC; Uncharacterized protein
STRING	XP_002500888.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4683	3	3

Link Out ? help Back to Top
Phytozome	56817
Entrez Gene	8241644

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]