PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57114

Common Name

SELMODRAFT_57106, SELMODRAFT_57114

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 151aa MW: 17573.5 Da PI: 10.435

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57114	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	16	35	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ 57114 16 FSCPVCSKTFNRYNNMQMHM 35 89*****************9 PP
2	zf-C2H2	17.1	1.5e-05	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F + + ++H +++ 57114 100 FPCRKCGKPFAVRGDWRTHEKNC 122 89*****************9987 PP
3	zf-C2H2	11.1	0.0012	129	145	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 +Cg F++k +Lk Hir 57114 129 ICGSDFKHKRSLKDHIR 145 8***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.66E-6	12	38	No hit	No description
SMART	SM00355	0.054	16	38	IPR015880	Zinc finger, C2H2-like
Pfam	PF13894	7.8E-4	16	38	No hit	No description
PROSITE profile	PS50157	10.242	16	43	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.6E-7	16	35	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	18	38	IPR007087	Zinc finger, C2H2
SMART	SM00355	280	63	95	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.0E-5	86	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.8E-6	86	120	No hit	No description
SMART	SM00355	71	100	120	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
YWIPTPAQIL VGPTQFSCPV CSKTFNRYNN MQMHMWGHGS QYRRGPESLR GTQPTAMLRL 60 PCYCCAVGCR NHVDHPRAKP LKDFRTLQTH YKRKHGIKPF PCRKCGKPFA VRGDWRTHEK 120 NCGKLWYCIC GSDFKHKRSL KDHIRAFGLG H

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002981844.2	1e-113	zinc finger and BTB domain-containing protein 18
Refseq	XP_002982811.2	1e-113	uncharacterized protein LOC9662050
Swissprot	Q9SVY1	1e-103	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	D8SEV6	1e-110	D8SEV6_SELML; Uncharacterized protein (Fragment)
STRING	EFJ16056	1e-110	(Selaginella moellendorffii)
STRING	EFJ16937	1e-110	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-106	C2H2 family protein

Link Out ? help Back to Top
Phytozome	57114
Entrez Gene	9634185 \| 9662050

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]