PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

57418

Common Name

MICPUCDRAFT_57418

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 217aa MW: 21659.6 Da PI: 4.5714

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57418	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	192	212	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f++tG C+yG C+++H+ 57418 192 CIEFQKTGGCSYGKECPYHHP 212 9*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.007	186	213	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.624	186	214	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.2E-5	188	213	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-6	192	212	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVDDDAPPGT APTFLPPPAP PPGMQAPAFL PPPAAPGQLG VGALPIAGMH PSHASAPFPG 60 VVVGAPATAP TPAPPGYPDY SRLHAIAAEI DLDALEDDGS FNPLLDPNYA SLQLAVAQAT 120 ERDPDGAAAW YQSLCDDGPR AMAKKIVEGI VPGMMPGMGA ARVGGMARAV PGGAAAAAAA 180 ADLPQRPNAA HCIEFQKTGG CSYGKECPYH HPIGGV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003058191.1	1e-150	predicted protein
TrEMBL	C1MQU7	1e-148	C1MQU7_MICPC; Predicted protein
STRING	XP_003058191.1	1e-149	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15552	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	5e-06	C3H family protein

Link Out ? help Back to Top
Phytozome	57418
Entrez Gene	9683629

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]