PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

57443

Common Name

MICPUN_57443

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 217aa MW: 24159.8 Da PI: 11.1978

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57443	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.8	3.3e-12	31	82	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +tk+q ++Le ++e ++ p+ ++ ++LA++lgL+ V+ WF+ rR k+k+ 57443 31 GITKSQEQILEGVYELEPIPDWRTEARLAMQLGLDSLAVTAWFKARRKKQKR 82 589************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.989	23	83	IPR001356	Homeobox domain
SMART	SM00389	2.8E-5	26	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-12	26	94	IPR009057	Homeodomain-like
CDD	cd00086	3.47E-6	26	82	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-11	26	87	IPR009057	Homeodomain-like
Pfam	PF00046	2.3E-9	31	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSLEEKQAAA LRRRRRAFLD EVERIKKRQG GITKSQEQIL EGVYELEPIP DWRTEARLAM 60 QLGLDSLAVT AWFKARRKKQ KRANIRYWYT VIVGVLFVLG LVLYFHELGG LSDMLKKRRL 120 GGPPNKRFFT KSGLPRPYRV KPPGAKRFQA PKDPPKNQKK DAAAGSGGGD SGGKDSAKAK 180 SSSSSSFFGG SATKASTVRY AKPTYEQEAA GRRRNE*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500754.1	1e-155	predicted protein
TrEMBL	C1E315	1e-154	C1E315_MICCC; Uncharacterized protein
STRING	XP_002500754.1	1e-155	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9294	5	5

Link Out ? help Back to Top
Phytozome	57443
Entrez Gene	8242370

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]