PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57477

Common Name

SELMODRAFT_57477

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 133aa MW: 15436 Da PI: 10.1946

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57477	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.2	2.1e-34	1	55	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl 57477 1 KQRLRWTSELHDRFVEAVTQLGGPDRATPKGVLRIMGVHGLTIYHVKSHLQKYRL 55 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	5.1E-27	1	56	IPR006447	Myb domain, plants
PROSITE profile	PS51294	16.589	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-18	1	55	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-32	1	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-9	3	54	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-23	82	129	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
KQRLRWTSEL HDRFVEAVTQ LGGPDRATPK GVLRIMGVHG LTIYHVKSHL QKYRLAKFIP 60 DSSGDGTLFD SYLSSKCLCR GIQLTEALRM QMEVQKRLHE QLEVQRQLQL RIEAQSTYLA 120 KIIEEQQKMR GML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-26	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-26	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-26	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-26	1	58	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024534757.1	2e-78	myb family transcription factor PHL6
Refseq	XP_024534758.1	2e-78	myb family transcription factor PHL6
Refseq	XP_024544435.1	2e-78	myb family transcription factor PHL6
Refseq	XP_024544436.1	2e-78	myb family transcription factor PHL6
Swissprot	Q9SJW0	4e-66	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	D8RS23	9e-93	D8RS23_SELML; Uncharacterized protein (Fragment)
STRING	EFJ24990	2e-93	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	8e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	57477
Entrez Gene	9643035

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]