PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57652

Common Name

SELMODRAFT_57652

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 171aa MW: 20095.4 Da PI: 7.482

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57652	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	62	85	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F + ++L H + H 57652 62 WRCGYCHKIFESEEYLDLHFDNrH 85 58**************99976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	64	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
GDHGVQCSRA RSRTARHILE EYLLPFVENE NYALSPQCRL HASNDAFREQ EREKQFYHIH 60 DWRCGYCHKI FESEEYLDLH FDNRHSETLN VSRDNCLADV CGALHCDYME TKDKHKFSKN 120 KCSPSVDRNR HLCEKLANSC FPPQQGAQAT RLNDFFLRQF CDAHSCKPGK R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974450.2	1e-126	uncharacterized protein LOC9658392
TrEMBL	D8RTG6	1e-125	D8RTG6_SELML; Uncharacterized protein (Fragment)
STRING	EFJ24672	1e-125	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4846	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	2e-59	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	57652
Entrez Gene	9658392

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]