PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 57988
Common NameMICPUCDRAFT_57988
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family AP2
Protein Properties Length: 420aa    MW: 45815 Da    PI: 8.7094
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
57988genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323e-1091141155
    AP2   1 sgykGVrwdkk.rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
            ++ykGV+ d++ +++W ++Ir       + + ++lg++ ++eeA +a+++a  + +g
  57988  91 TRYKGVYIDRNvSNKWKSSIRL------NqREVHLGYYESEEEASRAYDQACICVKG 141
            68****988864688*******......44********************9887766 PP
2AP233.88.7e-11184233155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
            s+++GV++ kk+++W+Ae   + +ng  k+ slg++  +++A +a+++a   l+g
  57988 184 SKHRGVCFEKKTKKWRAE---VQING--KKESLGYHAVEDDAVRAYDKACIVLKG 233
            79****************...55565..999*******99********9777766 PP
3AP235.33e-11276326149
    AP2   1 sgykGVrwdkkrgr.......WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
            s+y+GVr++  +++       W+AeI         k+ slg+++t++ Aa+a++ a
  57988 276 SKYRGVRQHTHNQKqggqsvkWRAEITID-----GKKKSLGYHDTEDAAARAYDDA 326
            89***********************9882.....3**********99******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-591141IPR001471AP2/ERF domain
PROSITE profilePS5103211.89192152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-992143IPR001471AP2/ERF domain
SMARTSM003800.002492153IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1192143IPR016177DNA-binding domain
PfamPF008471.4E-6184233IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-10184242IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-9185242IPR001471AP2/ERF domain
SMARTSM003801.3E-4185247IPR001471AP2/ERF domain
PROSITE profilePS5103211.495185241IPR001471AP2/ERF domain
PfamPF008477.1E-7276326IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-10276342IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-11277342IPR001471AP2/ERF domain
PROSITE profilePS5103213.696277341IPR001471AP2/ERF domain
SMARTSM003808.5E-9277347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKHDAKKRAL ETAAALGDEH DLEQRHDQHA SKVARVFPTS DNHGGLGSTP PRNVDTEDEL  60
EGADGGARAD ALAPDDAAGK RDAAKKEGKP TRYKGVYIDR NVSNKWKSSI RLNQREVHLG  120
YYESEEEASR AYDQACICVK GETKNHPMET YDRVLIEELT AMNKDVELLR RKIGVGHASR  180
DCSSKHRGVC FEKKTKKWRA EVQINGKKES LGYHAVEDDA VRAYDKACIV LKGERAKTNH  240
PLETYADEME QLGKWTFEQY QGTLKTNARR HASWTSKYRG VRQHTHNQKQ GGQSVKWRAE  300
ITIDGKKKSL GYHDTEDAAA RAYDDAFVIM KGCRRELLNF PDRSMIDVVG GAAGGAEGAE  360
GGGADHASLT AAGRAFGAVG ATTKSVGGVK GKKVAAAAAQ KAQEGAVQPG NFIASLEDP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058827.10.0predicted protein
TrEMBLC1MT980.0C1MT98_MICPC; Predicted protein
STRINGXP_003058827.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP552679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.12e-13target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]