PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 58153
Common NameMICPUN_58153
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family HSF
Protein Properties Length: 140aa    MW: 15956 Da    PI: 9.8719
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
58153genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.81.2e-17241192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH...THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX.XXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldeeefakk...vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg.kkell 94 
                   F++kl+++++d++ +++++w ++g+sfv++dee+f+++   vLp      n+  F R L  YgFkk + ++          eF+h+ F +g ++++l
         58153  24 FVSKLHDMVDDPKRRDYVRWAKDGRSFVITDEEKFERNlagVLPGLSFMVNMGNFHRELANYGFKKPDAHK---------LEFEHEGFVRGaDETEL 111
                   9***********************************96444789988899***************998888.........79******76626789* PP

                   XXXXXXXX CS
  HSF_DNA-bind  95 ekikrkks 102
                    +++rk++
         58153 112 ARVRRKEN 119
                   ***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-2119108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.27E-1820108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-1820117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-1824117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-52447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-57890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGADTTIRPN YNIFAFGADK VSPFVSKLHD MVDDPKRRDY VRWAKDGRSF VITDEEKFER  60
NLAGVLPGLS FMVNMGNFHR ELANYGFKKP DAHKLEFEHE GFVRGADETE LARVRRKENY  120
GRYRKDTSTA GKPPAIVRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013250.0CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002501918.12e-99heat shock transcription factor
TrEMBLC1E4T84e-98C1E4T8_MICCC; Heat shock transcription factor
STRINGXP_002501918.16e-99(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1538222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.12e-18heat shock transcription factor A1E
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]