PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

58222

Common Name

MICPUN_58222

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

bZIP

Protein Properties

Length: 428aa MW: 45984.1 Da PI: 8.5014

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
58222	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	19.7	1.8e-06	172	206	6	40
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 +e r+ +NR +A sRqRK+ e+ +L+++++eLe 58222 172 KEARLRRNRASAALSRQRKRLELVHLRRRCAELER 206 7899*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.1E-9	160	227	No hit	No description
SMART	SM00338	0.0074	167	238	IPR004827	Basic-leucine zipper domain
CDD	cd14812	2.51E-15	172	223	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MSLAVVAPHR APSIDPALRA FLAECLDGTD VDGDIGEVRS VDVPDLPRAL SFDDADVDLS 60 GICAWLEGDV GLATNDDDDD DDDDDDDARA LASTTPRASS TSKKRAPPGS LEHDSVRAPP 120 ARTSGDKRGR RGAPATPSRR DELTDRGSVE YSDPNSDPSS VETNSEGGDP SKEARLRRNR 180 ASAALSRQRK RLELVHLRRR CAELERAVAH FQYVAQCASA ENVDLRRRVD GVTDEVAGSN 240 PVVAAVNPVT RLPIPRMAPI HSSTTRGRRT GAADTGAGHA DIDGEDRGGA LSGAPTGTGC 300 IGEEPFGADD AAYTLCDMPR VESRRRRGAA SRSRRRVECG VWCRPTQLAH GWRGCRRAER 360 GGRETRLRAT GSVPNAPRRA ALPLRRRLHR RVAHPVPARL VYSRIERLNK PAVLAGVVSV 420 VKTAQVD*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MSLAVVAPHR APSIDPALRA FLAECLDGTD VDGDIGEVRS VDVPDLPRAL SFDDADVDLS  60
GICAWLEGDV GLATNDDDDD DDDDDDDARA LASTTPRASS TSKKRAPPGS LEHDSVRAPP  120
ARTSGDKRGR RGAPATPSRR DELTDRGSVE YSDPNSDPSS VETNSEGGDP SKEARLRRNR  180
ASAALSRQRK RLELVHLRRR CAELERAVAH FQYVAQCASA ENVDLRRRVD GVTDEVAGSN  240
PVVAAVNPVT RLPIPRMAPI HSSTTRGRRT GAADTGAGHA DIDGEDRGGA LSGAPTGTGC  300
IGEEPFGADD AAYTLCDMPR VESRRRRGAA SRSRRRVECG VWCRPTQLAH GWRGCRRAER  360
GGRETRLRAT GSVPNAPRRA ALPLRRRLHR RVAHPVPARL VYSRIERLNK PAVLAGVVSV  420
VKTAQVD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001325	0.0	CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002501957.1	0.0	predicted protein
TrEMBL	C1E505	0.0	C1E505_MICCC; Uncharacterized protein
STRING	XP_002501957.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15358	2	2

Link Out ? help Back to Top
Phytozome	58222
Entrez Gene	8242834

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]