PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 58247
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family AP2
Protein Properties Length: 575aa    MW: 59404.6 Da    PI: 6.1576
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
58247genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.9e-13322371155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
            s+++GV+ + ++grW+A+I++       k+++lg f+++++Aa a++ a+ k +g
  58247 322 SRFRGVTHHCRTGRWEAHIWED-----GKQVYLGGFDSEDQAALAYDVAAVKCRG 371
            789******************3.....3**********99**********98876 PP
2AP235.62.3e-11414462153
    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
            s+++GV+++  +grW+A+I   +   g +k+ +lg ++t++eAa a++  + + 
  58247 414 SKFRGVTRHQ-KGRWEARIGQlV---G-KKYRYLGLYDTEDEAAVAYDTEAVRQ 462
            79*****999.7******99977...2.5**********99*******877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16322381IPR016177DNA-binding domain
CDDcd000181.70E-16322379No hitNo description
PfamPF008474.8E-8322371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-15323379IPR001471AP2/ERF domain
SMARTSM003801.2E-26323385IPR001471AP2/ERF domain
PROSITE profilePS5103216.99323379IPR001471AP2/ERF domain
CDDcd000186.41E-17414474No hitNo description
SuperFamilySSF541719.81E-16414473IPR016177DNA-binding domain
PfamPF008471.6E-5414456IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-14415473IPR001471AP2/ERF domain
SMARTSM003803.5E-25415478IPR001471AP2/ERF domain
PROSITE profilePS5103215.54415472IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MAKSSRRAPS SAAATPSRGD AARAARDAAD AAAVAAAAKD AAAFGSLELS EAERAVVTAA  60
DFDDALACFA SNEIFRMSYA EANVGGGVGG GDGGVGVDDR DFPAAFADVL VRGVGEACEL  120
SELAPPPPGE GAGARLKEGG VEPRARASGS GMSAGSGQTA LCGDAMRGSA GRAERGMLEE  180
ERRGRAPGGA FDDYFFDDDA AGLGGGGGGI GPGGDSIPVL ASTMVYSAHP IPRGASLRYE  240
HYDERYDPYL RAPPPPPAAP AAFRDDRRSL EVATTPAAGA ARRGCDANNA NANKRGRACG  300
SINGLPGRET KRPKSGSAGS TSRFRGVTHH CRTGRWEAHI WEDGKQVYLG GFDSEDQAAL  360
AYDVAAVKCR GDDAATNFDM ENYRQELAAL DAIEKDELVL SLRRQSKGFL KGSSKFRGVT  420
RHQKGRWEAR IGQLVGKKYR YLGLYDTEDE AAVAYDTEAV RQKGFDAVTN FDLSEYADVL  480
ADHHASVRGG GKGKPAAAAA AAAAATATAT ATATAAAPAT SSPPSFPAPA SIQQRLKRAS  540
ETSLGGMRPG PAAEKEPSDG AIETVRAFLG ILRVD
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-52AP2 family protein