PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59082
Common NameSELMODRAFT_59081, SELMODRAFT_59082
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family SRS
Protein Properties Length: 118aa    MW: 12859.7 Da    PI: 8.5913
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59082genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702102.76.4e-32154861
  DUF702  8 CqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaass 61
            C++CGnqakkdC+++RCRtCCksrgf+C+thv+stWvpaakrrerq ++aaa +
   59082  1 CKECGNQAKKDCVYQRCRTCCKSRGFECSTHVRSTWVPAAKRRERQLAEAAAVA 54
            *********************************************988887654 PP
2DUF70268.81.7e-2165118100152
  DUF702 100 letsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGl 152
             +++ slP+ev+++avf+cv+v+sv+d ge+e+aYq++v igG +fkG+L+d+G+
   59082  65 TDAGSLPSEVRAQAVFKCVKVTSVEDgGEDEFAYQAVVRIGGRIFKGVLQDHGV 118
             56778*********************899***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.1E-28154IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.6E-27142IPR006510Zinc finger, lateral root primordium type 1
PfamPF051426.6E-1967118IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016249.4E-2470118IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
CKECGNQAKK DCVYQRCRTC CKSRGFECST HVRSTWVPAA KRRERQLAEA AAVASGQPPL  60
HLFATDAGSL PSEVRAQAVF KCVKVTSVED GGEDEFAYQA VVRIGGRIFK GVLQDHGV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854799.26e-49protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ9SD401e-42SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLD8RLS75e-81D8RLS7_SELML; Uncharacterized protein (Fragment)
STRINGEFJ266919e-82(Selaginella moellendorffii)
STRINGEFJ269769e-82(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-45Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]