PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59098
Common NameMICPUN_59098
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family G2-like
Protein Properties Length: 586aa    MW: 58998.9 Da    PI: 6.9776
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59098genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.71.5e-29243296155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              +prl+Wtp LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
    59098 243 RPRLVWTPPLHKRFVDAVSHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 296
              59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.63E-19241300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-30242301IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23244296IPR006447Myb domain, plants
PfamPF002491.8E-6246295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MTAVVAETDQ GKAAKEPPAK PGKEETGNGT TGKPPSEVMW AWEQGLPRPE QLPGTNSQLL  60
TPSLANAFGI QMMNGYRYPL PPPSQESGER ANGESRAAQG SYHDPMGAAQ MQASMPPPYA  120
NFHHSMPPPG SANAQAAAAA AMASAAISNP YGFPGMYQAP FGAQRPGGHY DPYGRSLGQG  180
GDRGMGHSQG HLDPNVSFEH MMAYQAGMEH SRSFEAFKRS REEPGMSMGL EGSEDDHAHA  240
LKRPRLVWTP PLHKRFVDAV SHLGIKNAVP KTIMQLMNVE GLTRENVASH LQKYRLYLKR  300
LQGCSESTME NSPSREGGGS GGGSGEGSGG DTGPGARHGG GSGGDGSGNE YKREGSGSEG  360
NDGPGSGQGS GGGAANGGTG SGAHDGGGSG GSDGGSGKGN PAAQSEKGSG AGNASGGSGN  420
GSGNGSDGGG QTQTLKASNK DGPQSQKTEP GAPAAPAATA QVNKGSTPQG NSGAAPTQAE  480
LKPGVDEKLK LKHTRQGSGS GGEGGASGGE GNGSDDGEER PNSMERASSG DGSNDGANEV  540
DEPGRKGKLG NSARDAPATS KPPPATSKPP TTEDKKTKRT GKSTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-32243299157Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013270.0CP001327.1 Micromonas sp. RCC299 chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503114.10.0predicted protein
TrEMBLC1E7Q30.0C1E7Q3_MICCC; Uncharacterized protein
STRINGXP_002503114.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.23e-37G2-like family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]