PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59179

Common Name

SELMODRAFT_59179

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LBD

Protein Properties

Length: 116aa MW: 13139.2 Da PI: 9.9692

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59179	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.2e-44	4	103	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyf +++p+kfa vhk+FGasnv+k+l++lp e+r+da++s+vyeA+ar+rdPvyG++g i++lqqq++ql+++l+++++e 59179 4 PCAACKLLRRKCTRECVFAPYFSSSEPQKFAQVHKIFGASNVSKMLQELPVERRRDAVASIVYEANARIRDPVYGCLGAIFTLQQQIAQLRKQLSAAQSE 103 7**********************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.709	3	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-44	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
SSSPCAACKL LRRKCTRECV FAPYFSSSEP QKFAQVHKIF GASNVSKMLQ ELPVERRRDA 60 VASIVYEANA RIRDPVYGCL GAIFTLQQQI AQLRKQLSAA QSEMVLLKFQ HQHREP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	1	105	8	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	1	105	8	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353054.1	1e-54	PREDICTED: LOB domain-containing protein 4
Refseq	XP_016681402.1	1e-54	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_020256238.1	2e-54	LOB domain-containing protein 4
Swissprot	Q8LBW3	1e-51	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	D8S3L8	2e-79	D8S3L8_SELML; Uncharacterized protein (Fragment)
STRING	EFJ21127	3e-80	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-54	LBD family protein

Link Out ? help Back to Top
Phytozome	59179
Entrez Gene	9657783

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]