PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59269

Common Name

SELMODRAFT_59269

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

SRS

Protein Properties

Length: 122aa MW: 13484.1 Da PI: 9.4116

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59269	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	85.9	9.4e-27	1	55	12	66
DUF702 12 GnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaas 66 GnqakkdC+++RCRtCCksr+fdC+thvkstWvpaa+rr+r ++++a s 59269 1 GNQAKKDCQFQRCRTCCKSRSFDCQTHVKSTWVPAAHRRNRGAAAHAGGDAMIDS 55 9****************************************77766654444333 PP
2	DUF702	82.7	9.3e-26	63	121	93	151
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqG 151 s+ ++++ + +P+ev+++avfrcv+++sv+dge+e+aYqt+v igGh+fkG+L+d+G 59269 63 SGLPRSKRARAAFPAEVRAQAVFRCVKLTSVEDGEDEYAYQTTVRIGGHIFKGVLHDRG 121 445555666677*********************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.1E-46	1	121	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.4E-24	1	38	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.9E-28	74	122	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
GNQAKKDCQF QRCRTCCKSR SFDCQTHVKS TWVPAAHRRN RGAAAHAGGD AMIDSSSYDH 60 ESSGLPRSKR ARAAFPAEVR AQAVFRCVKL TSVEDGEDEY AYQTTVRIGG HIFKGVLHDR 120 GI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024402502.1	5e-43	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2
Refseq	XP_024534506.1	3e-42	AT-rich interactive domain-containing protein 1B-like, partial
Swissprot	Q9SJT8	2e-39	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	D8S5N9	2e-85	D8S5N9_SELML; Uncharacterized protein (Fragment)
STRING	EFJ20090	3e-86	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-39	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	59269
Entrez Gene	9653861

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]