PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59370
Common NameMICPUN_59370
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family WOX
Protein Properties Length: 191aa    MW: 20595.2 Da    PI: 8.2094
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.24.3e-16117177257
               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 R+t+++ ql +LeelF+    +p+ + r++++++l     ++e++V++WFqN++a+ kk
     59370 117 GARWTPSAAQLARLEELFATgMGTPNGDLRTKITDELaklgPVNEANVYNWFQNKKARTKK 177
               68*****************99*****************9999*****************97 PP
2Wus_type_Homeobox76.83.1e-25118178464
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +RWtP++ Q+  Leel+ +G+ tPn +  ++it eL++ G ++++NV++WFQN+kaR ++k
              59370 118 ARWTPSAAQLARLEELFATGMGTPNGDLRTKITDELAKLGPVNEANVYNWFQNKKARTKKK 178
                        7**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.969113178IPR001356Homeobox domain
SuperFamilySSF466895.01E-12114178IPR009057Homeodomain-like
SMARTSM003899.9E-8115182IPR001356Homeobox domain
CDDcd000862.45E-7116178No hitNo description
Gene3DG3DSA:1.10.10.603.8E-11116184IPR009057Homeodomain-like
PfamPF000461.1E-13117177IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSEGLCANDP IFDVPPLPTD EQVKRFGMDG DGPYPTIAPG AMTWTQLDTL RHQIAAFSHL  60
CEQRALLTQQ IYEESKPGHQ RSQTLAAIAN SIGVSAAGSQ PSYPGPVYSK GGDGPRGARW  120
TPSAAQLARL EELFATGMGT PNGDLRTKIT DELAKLGPVN EANVYNWFQN KKARTKKKLL  180
EEQAAKNRSG *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013270.0CP001327.1 Micromonas sp. RCC299 chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503252.11e-141predicted protein
TrEMBLC1E8G91e-139C1E8G9_MICCC; Uncharacterized protein
STRINGXP_002503252.11e-140(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP644567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.12e-20WUSCHEL related homeobox 14
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]