PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

59514

Common Name

MICPUN_59514

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 297aa MW: 32150.2 Da PI: 10.0149

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59514	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.5	2.6e-09	180	201	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++r C++G++C+F H+ 59514 180 DCRHWRRERSCPRGETCPFVHV 201 7********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.404	175	203	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-7	180	201	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.9E-5	181	200	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MPTGSKRKAP SAPRDPADDC ETPDVAYAHI APLLRKLAQR LGKPPGALRI WDPYYCAGGV 60 KARLGALGFG DVVNDPDADF YDVVDGSRPP PPHDICVTNP PFSGNHARRL FEYLNSRGER 120 GEGKGTTKGG PVARFVVLAP EYVHRKAWFE APRGTFFMVP SRRYSFVAAS GGRRENTAVD 180 CRHWRRERSC PRGETCPFVH VGPGIDPEGE RVAEEARRAR ANAGFSGGGG GGDGGRVTVA 240 PFDCYWHCHL GEFTRSVAAA WRQKHGRRGR VGVRMVDGVE GLPPPPDKSA KRARGG*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001327	0.0	CP001327.1 Micromonas sp. RCC299 chromosome 6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002503321.1	0.0	predicted protein
TrEMBL	C1E8W4	0.0	C1E8W4_MICCC; Uncharacterized protein
STRING	XP_002503321.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP14973	2	2

Link Out ? help Back to Top
Phytozome	59514
Entrez Gene	8244608

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]