PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

5961

Common Name

MADS7-1, MADS7-2, SELMODRAFT_450800, SELMODRAFT_450939

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

M-type_MADS

Protein Properties

Length: 129aa MW: 14792.1 Da PI: 9.895

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
5961	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58	1.2e-18	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+n+ rqvtf kR++g+ KKAeEL +LC+++v++i +++ 5961 11 IKNDASRQVTFNKRKKGMKKKAEELAILCGVDVCMICYGPA 51 99************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.469	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.8E-19	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-24	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.28E-20	2	83	No hit	No description
PRINTS	PR00404	3.9E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.9E-20	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MGRSKIPITW IKNDASRQVT FNKRKKGMKK KAEELAILCG VDVCMICYGP ASSSAGWGMP 60 GVSSVISKFE GLPKEERDKK KLDNTSLLEQ QIKKLRRELK AKLDQNWKLE QERAYNLAWD 120 DRIDGYDLE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RIH9	5e-68	D8RIH9_SELML; Type I MADS-domain transcription factor
STRING	EFJ07769	8e-69	(Selaginella moellendorffii)
STRING	EFJ28095	8e-69	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP114	13	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	7e-16	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	5961
Entrez Gene	9635087 \| 9641317

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]