PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59613

Common Name

SELMODRAFT_52756

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 52aa MW: 5952.72 Da PI: 5.8142

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59613	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	24.7	2.7e-08	6	51	271	320
GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 + ++ + e++ +++ +r+i+n+vaceg +r+er +++ W +r + 59613 6 V----AEGKPEEHGFIQKVAARDIMNIVACEGLDRVERAASYRVWDARAK 51 3....3445555555566699************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.991	1	52	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.4E-6	6	51	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 52 aa Download sequence Send to blast
EYFEAVAEGK PEEHGFIQKV AARDIMNIVA CEGLDRVERA ASYRVWDARA KR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002977216.2	8e-28	scarecrow-like protein 31
TrEMBL	D8S1C5	2e-29	D8S1C5_SELML; Uncharacterized protein (Fragment)
TrEMBL	D8S1D2	1e-26	D8S1D2_SELML; Uncharacterized protein (Fragment)
STRING	EFJ21822	3e-30	(Selaginella moellendorffii)
STRING	EFJ21825	2e-27	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	2e-10	GRAS family protein

Link Out ? help Back to Top
Phytozome	59613
Entrez Gene	9638951

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]