PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59621

Common Name

SELMODRAFT_59621, SELMODRAFT_59622

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Protein Properties

Length: 116aa MW: 13782.7 Da PI: 10.5805

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59621	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	88.6	5e-28	4	106	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f kv tpsdv+k++rlv+pk++ae++ ++ k++ + e+ +g++W ++++y+++s++yv+tkGW +Fvk+n+Lk+gD+v F++ +++ ++++++ ++ 59621 4 FYKVVTPSDVGKLNRLVIPKQHAERCfpldpSLRKKGRFLSFQESFTGKVWWFRYSYWNSSQSYVFTKGWIRFVKENKLKAGDIVSFERGSSRHENFYISCRK 106 789**********************988755555544444455899**************************************765566666777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.5E-38	1	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.28E-23	2	106	No hit	No description
SuperFamily	SSF101936	1.57E-30	2	108	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.677	4	108	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-25	4	106	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-20	4	106	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
EHLFYKVVTP SDVGKLNRLV IPKQHAERCF PLDPSLRKKG RFLSFQESFT GKVWWFRYSY 60 WNSSQSYVFT KGWIRFVKEN KLKAGDIVSF ERGSSRHENF YISCRKRPRT PSDDPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-46	1	110	5	116	B3 domain-containing transcription factor NGA1
5os9_B	3e-46	1	110	5	116	B3 domain-containing transcription factor NGA1
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Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024537223.1	2e-82	B3 domain-containing transcription factor NGA1-like
Swissprot	O82799	1e-45	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	D8RQU3	2e-80	D8RQU3_SELML; Uncharacterized protein (Fragment)
STRING	EFJ22224	3e-81	(Selaginella moellendorffii)
STRING	EFJ25515	3e-81	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP365	16	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	5e-48	B3 family protein

Link Out ? help Back to Top
Phytozome	59621
Entrez Gene	9637891 \| 9649166

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]