PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59642

Common Name

SELMODRAFT_49270, SELMODRAFT_59642

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LBD

Protein Properties

Length: 93aa MW: 10037.7 Da PI: 9.4701

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59642	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.8	6.3e-37	6	93	1	87
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++ap+f +eq +++fa+vhk+FGasnv+kll+++p +r+da+ ++ yeA+ar++dPvyG+v++i +lq+q+ 59642 6 PCGACKFLRRKCVNNCIFAPHFNSEQgAARFAAVHKIFGASNVTKLLHHIPVAKRSDAVLTISYEAQARLSDPVYGCVATIVALQHQV 93 7*********************9989*******************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.338	5	93	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-36	6	93	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:1900150	Biological Process	regulation of defense response to fungus

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSNGAPCGAC KFLRRKCVNN CIFAPHFNSE QGAARFAAVH KIFGASNVTK LLHHIPVAKR 60 SDAVLTISYE AQARLSDPVY GCVATIVALQ HQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	4	93	9	97	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	4	93	9	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002973794.2	2e-62	LOB domain-containing protein 20
Refseq	XP_002983602.2	4e-63	LOB domain-containing protein 20
Swissprot	Q9SRV3	3e-52	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	D8RRS7	2e-62	D8RRS7_SELML; Uncharacterized protein (Fragment)
STRING	EFJ15503	4e-63	(Selaginella moellendorffii)
STRING	EFJ24749	4e-63	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP405	15	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-54	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	59642
Entrez Gene	9642855 \| 9655072

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]