PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59650

Common Name

SELMODRAFT_49607, SELMODRAFT_59650

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LBD

Protein Properties

Length: 93aa MW: 10871.8 Da PI: 8.5035

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59650	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.5	7.9e-37	1	93	2	94
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 CaaC+++rr+C++ C+la+yfpa+++++f n +klFG+sn+l+ll+++ ++r+++m+sl++eA++r +dPv+G++g+i l+qql++l+ el 59650 1 CAACRFQRRRCSPACPLAKYFPASENQRFMNCKKLFGVSNMLRLLNQVLVKDRDETMQSLMFEADVREQDPVHGCMGIICMLEQQLDKLRREL 93 ****************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.9E-36	1	93	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	22.423	1	93	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
CAACRFQRRR CSPACPLAKY FPASENQRFM NCKKLFGVSN MLRLLNQVLV KDRDETMQSL 60 MFEADVREQD PVHGCMGIIC MLEQQLDKLR REL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-30	1	93	12	104	LOB family transfactor Ramosa2.1
5ly0_B	5e-30	1	93	12	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002988022.2	2e-64	LOB domain-containing protein 22
Refseq	XP_024533779.1	2e-64	LOB domain-containing protein 22
TrEMBL	D8RNR9	8e-62	D8RNR9_SELML; Uncharacterized protein (Fragment)
STRING	EFJ10814	1e-62	(Selaginella moellendorffii)
STRING	EFJ26128	1e-62	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-31	LBD family protein

Link Out ? help Back to Top
Phytozome	59650
Entrez Gene	9636497 \| 9656100

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]