PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59725
Common NameDUO1A-1, DUO1A-2, SELMODRAFT_116971, SELMODRAFT_118852
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 100aa    MW: 11624.5 Da    PI: 10.1142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59725genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-15348146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde+lv++v+q+G+++W++I ++  + Rt+k+c++rw +
            59725  3 KGPWMPEEDEILVEYVRQYGPRDWSSIRSKGLLPRTGKSCRLRWVN 48
                     79*************************8876677**********87 PP
2Myb_DNA-binding50.54.8e-165998344
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     ++++eE++l v+   +lG++ W++Ia++++ gRt++++k++w
            59725 59 KFSPEEEKLVVEMQSKLGNK-WAKIASCLP-GRTDNDVKNFW 98
                     79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-21151IPR009057Homeodomain-like
PROSITE profilePS5129424.518154IPR017930Myb domain
SMARTSM007171.8E-12252IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-29298IPR009057Homeodomain-like
CDDcd001672.16E-11550No hitNo description
PfamPF139211.2E-14667No hitNo description
Gene3DG3DSA:1.10.10.605.7E-1852100IPR009057Homeodomain-like
PROSITE profilePS5129416.39455100IPR017930Myb domain
SMARTSM007178.9E-856100IPR001005SANT/Myb domain
CDDcd001672.35E-105998No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
LRKGPWMPEE DEILVEYVRQ YGPRDWSSIR SKGLLPRTGK SCRLRWVNKL KPDLKSGCKF  60
SPEEEKLVVE MQSKLGNKWA KIASCLPGRT DNDVKNFWST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-30110025122MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024544498.13e-64transcription factor MYB63
SwissprotQ0JB897e-54MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLD8SHC23e-67D8SHC2_SELML; Uncharacterized protein DUO1A-1
STRINGEFJ152275e-68(Selaginella moellendorffii)
STRINGEFJ159805e-68(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-55MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]