PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59732
Common NameMICPUCDRAFT_59732
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family GATA
Protein Properties Length: 176aa    MW: 17791.6 Da    PI: 8.969
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59732genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17113145133
   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
            C++C++ kTp+WR gp+g+ktLCnaCG+ + k 
  59732 113 CAQCRAAKTPQWRTGPEGPKTLCNACGIAFLKA 145
            ****************************99775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-7756IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.93E-5756IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF116257.5E-7755IPR021660Protein of unknown function DUF3253
PROSITE profilePS5011411.134107140IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-12107158IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-11107148No hitNo description
Gene3DG3DSA:3.30.50.103.7E-13113146IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440113138IPR000679Zinc finger, GATA-type
PfamPF003202.7E-15113145IPR000679Zinc finger, GATA-type
CDDcd002025.94E-9113140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEARSIHWSP YDRATRREAR ALADAGTVEI TRGGDVVYDG KAKTGEWSGP VRLRLAATTT  60
TTSTAGEGGG GGKAGARDEG GGGGGGGGGE KKRRDGAAAA SPTPVAKRRR LGCAQCRAAK  120
TPQWRTGPEG PKTLCNACGI AFLKARKAEA KEEEEDAPPP ATADDDAKAG ADGAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191109KRRDGAAAASPTPVAKRRR
2106110KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060199.11e-117predicted protein
TrEMBLC1MWE11e-116C1MWE1_MICPC; Predicted protein
STRINGXP_003060199.11e-117(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-11GATA transcription factor 2
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]