PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59779

Common Name

MICPUN_59779

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

CAMTA

Protein Properties

Length: 1565aa MW: 163846 Da PI: 6.212

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59779	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.5	1.5e-50	55	171	2	117
CG-1 2 lkekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103 ++++rwlkn+e++++L n++++ ++l +++ rp+ g+++L++rk vr+frkDG+ w+kkkdgktvrE+hekLKvg+ve+l+cyYah+ en fqrrcywlL+ 59779 55 NQSRTRWLKNTEVCDMLLNYRSYGFALskTAPVRPPAGTIFLFDRKAVRFFRKDGHDWQKKKDGKTVRETHEKLKVGNVELLNCYYAHAAENDRFQRRCYWLLD 158 3459****************9988766899******************************************************************** PP CG-1 104 eelekivlvhylev 117 ++ e +vlvhyl++ 59779 159 SD-EGVVLVHYLDT 171 .********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	67.269	50	177	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.1E-57	53	172	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.7E-49	57	170	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.66E-14	694	780	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.93E-12	982	1074	No hit	No description
SuperFamily	SSF48403	2.8E-15	982	1076	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.4E-15	983	1077	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.759	985	1086	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.6E-7	994	1075	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.915	1018	1050	IPR002110	Ankyrin repeat
SMART	SM00248	4.4E-5	1018	1047	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.693	1500	1528	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1565 aa Download sequence Send to blast
MYQPRVSPSY NAGGSDSPAT GSDGGFGGVS ATALIMPEAE GPDGSTRAHV IEMLNQSRTR 60 WLKNTEVCDM LLNYRSYGFA LSKTAPVRPP AGTIFLFDRK AVRFFRKDGH DWQKKKDGKT 120 VRETHEKLKV GNVELLNCYY AHAAENDRFQ RRCYWLLDSD EGVVLVHYLD TTMVVGGRGG 180 AKGAGLGLAP GGSAPGSNSG TTDGEDQNGF RNLFRYASGM SQYSGSGYEE VASMGGMSGG 240 SPMMQSPARP GQYHPEVYQQ YSQQQQAVGG QYGHHGYGAP PTHHYPHGDS DPHALYHAAQ 300 EQFNGVAESE SWFNSVLASE DEAGEESGPG GPGRMSGVHR RASATLVDAA GRAVPFRQPS 360 SGRAVPFREG SNRSILSIGS GPPLDHGYFE MGQDESSNGP HFDLLKEFAV DQIAEAQGIK 420 VEGMPVESAA AAAAAAAAAG PNIGTAFPGE YRSDIADGVT SMAELESKIA SLKETLVRVA 480 SVNADASPEQ VDRLEQDMAA LERGAAAMRP AAGSVGGGGG GAKPGHRRGS SFGSGTRARP 540 PRARPVIWDG DDKDEDDADR EDDGDDDDDD GDDNEETAEG ALSPLAKAAA ATRRPRGADG 600 GRGAHRAAAL AAQQQQRMAG FPRVPSHPSE GSEMDAEMNN SDGDNGDISP RAPSPALRAA 660 QMRAAAEASH ARYNRARQPF IPPAQQGSPI LWAIDDFSPE WDTETGGGKV LVTGTPRPGL 720 PEGLYLCCVF GDVEVPAEQV SPGVLRCRAP PMNAGRVPFY ISCLGSGKRP ASDIRTFEYR 780 EAGAGGARDK RAAEIRLTSG VTERDFQLRL VHLLIGADRS SKASGGGGPG GPGGPGGGGG 840 GGGGGSTASG NGPSDGKGSG GSGGNTSSPD NRNGGGSSES RDVHGSPASP GRSGSQSGGL 900 GGGAGAGFTR RAVAALNLGA DPALDPNMSN LSDEDVGKVF KTALEARLRH AIAAEAKHHR 960 ARAEGIVPNP TYVQPKSAYA RVDAGGMGLI HCVAALGMKW AIPAMTKCGC DVNQPDRRNR 1020 TALHWAAAKG HEDTVATLLA SGANIRAMAR WGAGGYTAAD LAAALGHGGI AAYISETSLA 1080 ASLSNISLYG GAQGPATGRS LRSASFDRKR QQQQQQVQGL TTPLMSGAGV TPPGVTPGAG 1140 PTANRTGRAQ RDRVKAVPMR SLLLATETEV TATDAVTSQT EVETEAEFME GGGTSTERRE 1200 AVAAGMIQLA FRKHSVRRRK ARKKGGELNT VTEGVETGAA PRTGADRDVK KDVKKVVKKA 1260 EKAAQKITDS LRSLKVSKTA TGAAPELGKR RLGERSGGGL HHSTIPESEA MDVSVEEAAG 1320 SPPEGAEGAD FAMRSTSGGE EALAALRRRI AQLQERAVAL QGEIRAADYR GRQDRLQTLM 1380 PGGHHQRRRA ADIMQLISAG VGGGGGGGGG GEDGAAAARV VDWERAMLER ANSSKDSLDE 1440 VYRSGGGASN RLVKSATLRG RRQSHKSHSD DGNDSNKRST SDTNNNDDDS DDDEEEENVQ 1500 QAVARIQAIT RSREARDQYL RLRMVTQSMQ ERRDAIARGE AVKREEDEDG LDDVDVEEDE 1560 EEDE*

Sequence ? help Back to Top

Protein Sequence Length: 1565 aa Download sequence Send to blast

MYQPRVSPSY NAGGSDSPAT GSDGGFGGVS ATALIMPEAE GPDGSTRAHV IEMLNQSRTR  60
WLKNTEVCDM LLNYRSYGFA LSKTAPVRPP AGTIFLFDRK AVRFFRKDGH DWQKKKDGKT  120
VRETHEKLKV GNVELLNCYY AHAAENDRFQ RRCYWLLDSD EGVVLVHYLD TTMVVGGRGG  180
AKGAGLGLAP GGSAPGSNSG TTDGEDQNGF RNLFRYASGM SQYSGSGYEE VASMGGMSGG  240
SPMMQSPARP GQYHPEVYQQ YSQQQQAVGG QYGHHGYGAP PTHHYPHGDS DPHALYHAAQ  300
EQFNGVAESE SWFNSVLASE DEAGEESGPG GPGRMSGVHR RASATLVDAA GRAVPFRQPS  360
SGRAVPFREG SNRSILSIGS GPPLDHGYFE MGQDESSNGP HFDLLKEFAV DQIAEAQGIK  420
VEGMPVESAA AAAAAAAAAG PNIGTAFPGE YRSDIADGVT SMAELESKIA SLKETLVRVA  480
SVNADASPEQ VDRLEQDMAA LERGAAAMRP AAGSVGGGGG GAKPGHRRGS SFGSGTRARP  540
PRARPVIWDG DDKDEDDADR EDDGDDDDDD GDDNEETAEG ALSPLAKAAA ATRRPRGADG  600
GRGAHRAAAL AAQQQQRMAG FPRVPSHPSE GSEMDAEMNN SDGDNGDISP RAPSPALRAA  660
QMRAAAEASH ARYNRARQPF IPPAQQGSPI LWAIDDFSPE WDTETGGGKV LVTGTPRPGL  720
PEGLYLCCVF GDVEVPAEQV SPGVLRCRAP PMNAGRVPFY ISCLGSGKRP ASDIRTFEYR  780
EAGAGGARDK RAAEIRLTSG VTERDFQLRL VHLLIGADRS SKASGGGGPG GPGGPGGGGG  840
GGGGGSTASG NGPSDGKGSG GSGGNTSSPD NRNGGGSSES RDVHGSPASP GRSGSQSGGL  900
GGGAGAGFTR RAVAALNLGA DPALDPNMSN LSDEDVGKVF KTALEARLRH AIAAEAKHHR  960
ARAEGIVPNP TYVQPKSAYA RVDAGGMGLI HCVAALGMKW AIPAMTKCGC DVNQPDRRNR  1020
TALHWAAAKG HEDTVATLLA SGANIRAMAR WGAGGYTAAD LAAALGHGGI AAYISETSLA  1080
ASLSNISLYG GAQGPATGRS LRSASFDRKR QQQQQQVQGL TTPLMSGAGV TPPGVTPGAG  1140
PTANRTGRAQ RDRVKAVPMR SLLLATETEV TATDAVTSQT EVETEAEFME GGGTSTERRE  1200
AVAAGMIQLA FRKHSVRRRK ARKKGGELNT VTEGVETGAA PRTGADRDVK KDVKKVVKKA  1260
EKAAQKITDS LRSLKVSKTA TGAAPELGKR RLGERSGGGL HHSTIPESEA MDVSVEEAAG  1320
SPPEGAEGAD FAMRSTSGGE EALAALRRRI AQLQERAVAL QGEIRAADYR GRQDRLQTLM  1380
PGGHHQRRRA ADIMQLISAG VGGGGGGGGG GEDGAAAARV VDWERAMLER ANSSKDSLDE  1440
VYRSGGGASN RLVKSATLRG RRQSHKSHSD DGNDSNKRST SDTNNNDDDS DDDEEEENVQ  1500
QAVARIQAIT RSREARDQYL RLRMVTQSMQ ERRDAIARGE AVKREEDEDG LDDVDVEEDE  1560
EEDE*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001328	0.0	CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002503449.1	0.0	camta-like transcriptional regulator
TrEMBL	C1E9N0	0.0	C1E9N0_MICCC; Camta-like transcriptional regulator
STRING	XP_002503449.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5132	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	3e-42	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	59779
Entrez Gene	8244740

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]