PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59938
Common NameMICPUCDRAFT_59938
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family HSF
Protein Properties Length: 135aa    MW: 14774.9 Da    PI: 10.66
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59938genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind58.42e-18191141102
                   HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH...HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk...yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   +Fl++++++++d++++ +isw+++g+sfvv+d + + +  Lpk    F + +f SFv  L +YgF     e+++         F+++ F++gk e+l
         59938  19 TFLTRTFNMVNDAKTNAIISWDKTGKSFVVHDVNALCQ-RLPKiagLF-TPSFGSFVNELSIYGFAGAIAEDGS-------YVFSNDAFQRGKPEML 106
                   69***********************************9.788744345.678******************9999.......**************** PP

                   XXXXXXXX CS
  HSF_DNA-bind  95 ekikrkks 102
                   ++i+rk++
         59938 107 RTIRRKEN 114
                   *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-2116112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-2016112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-1816112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-1620112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-62043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-67284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MTTPLPWTVQ GVASAQIPTF LTRTFNMVND AKTNAIISWD KTGKSFVVHD VNALCQRLPK  60
IAGLFTPSFG SFVNELSIYG FAGAIAEDGS YVFSNDAFQR GKPEMLRTIR RKENFGRYRR  120
GSTRASAASL SMAQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060586.12e-96predicted protein
TrEMBLC1MYL04e-95C1MYL0_MICPC; Predicted protein
STRINGXP_003060586.16e-96(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-18heat shock transcription factor B2A
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]