PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60043
Common NameMICPUN_60043
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C2H2
Protein Properties Length: 349aa    MW: 38643.1 Da    PI: 8.6207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60043genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05160181223
              EETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
              kCp C+++F + s    Hi+tH
    60043 160 KCPLCDQMFATASKVAFHIKTH 181
              7********************9 PP
2zf-C2H215.84.1e-05249271123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC++C+k +  ks++++H r +
    60043 249 HKCKICDKAYALKSDMQTHERGC 271
              79*****************9976 PP
3zf-C2H216.23e-05278295522
              TTTEEESSHHHHHHHHHH CS
  zf-C2H2   5 dCgksFsrksnLkrHirt 22 
               Cg+++s++snL+ Hir+
    60043 278 ECGRRYSQRSNLNAHIRK 295
              7***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037159186IPR007087Zinc finger, C2H2
SMARTSM003550.098159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SMARTSM00355210208243IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.82E-7231275No hitNo description
Gene3DG3DSA:3.30.160.601.6E-7240269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035525249269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265269311IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4273294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPSAEDPAGF DRSRSWRISA SVKGIKDLVF RVPIGDGTLK VSELSDMIME RFARLRPGDS  60
TRAEKLEDGD GALLFPNERV CDVLFDKGRV VAVLSNKYTH MIQDAGGGKR PTKRIKGAGG  120
GMQVVAVQAY KRDDDEFEYI TPTVEEIMDV DTRRQEKRVK CPLCDQMFAT ASKVAFHIKT  180
HKDHPDLQQA IMAMDENTAF SEERERRFFC PSPNCAHNCD DNGELAHPFM DFPTLRKHFL  240
RTHVAEKPHK CKICDKAYAL KSDMQTHERG CGKAFTCECG RRYSQRSNLN AHIRKKAAEG  300
AAEGAHKLKR PGPPAIAGPA AGAVNVPPPP RGADPQRSVP ELLHHLSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013280.0CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503933.10.0predicted protein
TrEMBLC1EAE30.0C1EAE3_MICCC; Uncharacterized protein
STRINGXP_002503933.10.0(Micromonas sp. RCC299)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.18e-18WIP domain protein 5
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]