PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

60106

Common Name

MICPUN_60106

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 152aa MW: 16253 Da PI: 4.4916

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
60106	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	40.6	6e-13	39	107	24	92
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++ + k+a ec+ fi +ts a+d c+ kr+ti+ dd++ a+ +l f ++ eplk l+ +++ 60106 39 DGHVQKEALLAFGECAKIFIHILTSTANDICRDGKRQTISVDDVFKAVEELEFGEFGEPLKEALAAFKK 107 4678888888999*************************************************9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-36	7	147	IPR009072	Histone-fold
SuperFamily	SSF47113	1.42E-25	8	142	IPR009072	Histone-fold
Pfam	PF00808	2.1E-8	39	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MSEPQDDLPR AHIKRIVKAK LTALMNEGGP DAKGNKAPDG HVQKEALLAF GECAKIFIHI 60 LTSTANDICR DGKRQTISVD DVFKAVEELE FGEFGEPLKE ALAAFKKDAA AKSAKRNDAA 120 TKKRKAEEDD AAGEGEEDAE EEADEEAAEG A*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001328	1e-173	CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002503619.1	1e-103	predicted protein
TrEMBL	C1EAK8	1e-101	C1EAK8_MICCC; Uncharacterized protein
STRING	XP_002503619.1	1e-102	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3453	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-21	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	60106
Entrez Gene	8245254

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]