PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60229
Common NameMICPUCDRAFT_60229
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family HB-other
Protein Properties Length: 139aa    MW: 15991.2 Da    PI: 10.4189
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60229genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.66.5e-06871151038
               HHHHHHHHHHHHSSS--HHHHHHHHHHCT CS
  Homeobox  10 eqleeLeelFeknrypsaeereeLAkklg 38 
               + ++ + + +e+++yp++e++e +Ak++g
     60229  87 QFIQMMMKKYEEEPYPTREAMEAIAKEVG 115
               44899*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-489115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDPCAPSITF FDKDSGKGRV TYLVHVLPHE RALVHEPRAR GARRSSSSSS SSFAPLARRS  60
DGSRRRSLPK KLREPTEPKK NNPRRAQFIQ MMMKKYEEEP YPTREAMEAI AKEVGAPDWT  120
KIDSFYKNMH VKHQEEYQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060430.11e-99predicted protein
TrEMBLC1MXN93e-98C1MXN9_MICPC; Predicted protein
STRINGXP_003060430.15e-99(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1296533
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]