PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60638.m00016
Common NameLOC8271866, RCOM_2160420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 255aa    MW: 28366.9 Da    PI: 7.4368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60638.m00016genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-174797256
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   y+GVr++   ++Wv+e+r+p   + + r++lg++ t+e+Aa+a++ a+++++ge
  60638.m00016 47 IYRGVRRRN-GNKWVCEVREP---NLKSRIWLGTYPTPEMAARAHDVAALAFRGE 97
                  69****887.9******9999...345*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-2646106No hitNo description
PfamPF008471.6E-124697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-2747105IPR001471AP2/ERF domain
SMARTSM003808.0E-2447110IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1947105IPR016177DNA-binding domain
PROSITE profilePS5103220.49547104IPR001471AP2/ERF domain
PRINTSPR003671.5E-74859IPR001471AP2/ERF domain
PRINTSPR003671.5E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEKNDSSSTC KLSPCSPCSH ISHQATLAPA KKRKAGRTKF KETRHPIYRG VRRRNGNKWV  60
CEVREPNLKS RIWLGTYPTP EMAARAHDVA ALAFRGEFAS LNYLDSAWIL PRPKSSSHED  120
IKRAALEAAE AFKPSSTDLS STSPPSSSSC SSASSKPSHE DDLRFSLMDT QDENEKKVLN  180
NGNSSSMNIE PCPNVSIEIR NECSVTSFLD DEALFNMPVL LDSMAEGLIL TPPSIRRGFN  240
WDDMAFAVDL TLWRD
Cis-element ? help Back to Top
SourceLink
PlantRegMap60638.m00016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532187.10.0dehydration-responsive element-binding protein 1B
TrEMBLB9T1R80.0B9T1R8_RICCO; CBF-like transcription factor, putative
STRINGXP_002532187.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-53C-repeat-binding factor 4