PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 6091
Common NameSELMODRAFT_6091, SELMODRAFT_6100
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 113aa    MW: 13557.5 Da    PI: 11.0839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
6091genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-17348147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l+++v+++G+ +W+ Ia++++ gR++k+c++rw++ 
             6091  3 RGHWRPGEDDKLKELVALHGPQNWNMIAEKLQ-GRSGKSCRLRWFNQ 48
                     899*****************************.***********996 PP
2Myb_DNA-binding62.49e-205599147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r+++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ +
             6091 55 RQPFTEEEEERLLAAHRFHGNK-WAMIARLFP-GRTDNAVKNHWHVV 99
                     89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.757153IPR017930Myb domain
SMARTSM007174.5E-13251IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-29296IPR009057Homeodomain-like
PfamPF002491.1E-16348IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-27456IPR009057Homeodomain-like
CDDcd001671.84E-11647No hitNo description
SMARTSM007172.0E-1554102IPR001005SANT/Myb domain
PROSITE profilePS5129422.16754104IPR017930Myb domain
PfamPF002496.7E-165598IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2257103IPR009057Homeodomain-like
CDDcd001671.68E-666100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
CPRGHWRPGE DDKLKELVAL HGPQNWNMIA EKLQGRSGKS CRLRWFNQLD PRINRQPFTE  60
EEEERLLAAH RFHGNKWAMI ARLFPGRTDN AVKNHWHVVM ARKYRERTRT YGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3231047108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002984948.29e-80uncharacterized protein LOC9648767
SwissprotQ9SEZ44e-66MY105_ARATH; Transcription factor MYB105
TrEMBLD8S6T24e-79D8S6T2_SELML; Uncharacterized protein (Fragment)
STRINGEFJ141986e-80(Selaginella moellendorffii)
STRINGEFJ199906e-80(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-64myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]