PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60948
Common NameMICPUN_60948
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family E2F/DP
Protein Properties Length: 823aa    MW: 81033.4 Da    PI: 6.2193
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60948genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP741.6e-23130195171
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
              rk+ksL+ll+++fl+l+   +e+ ++l+e+a +L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
    60948 130 RKDKSLGLLCENFLHLYGAGQEELISLDEAAAKL---GV--ERRRIYDIVNVLESVEVVVRKAKNKYTWHG 195
              79********************************...**..****************************98 PP
2E2F_TDP70.22.5e-22352432171
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
              r+eksL+ll+qkf++l+  s++++v+l+++a++L+       + k+k+RR+YDi+N+L++l+liek     ++k+++rw g
    60948 352 RREKSLGLLSQKFVQLFLVSRARVVSLESAARTLLGScadqaKLKTKVRRLYDIANILSSLRLIEKthlvdSRKPAFRWLG 432
              689*******************************999999**99*************************999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-26127196IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.27E-15129194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.6E-30130195IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-20131195IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-23349434IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.7E-30352432IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-11354433IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.1E-19354432IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MQAPAAGGSS AAAAAPQGTA AAQPQPVIPG VAPAHAGAPL AGDPMAAALA AAQQFLGFMS  60
HAGVNPGGFP PGPAPGLFAP PGAPQGPARP GSAAAMFSPD HHQMRPGEGP ASRGATPGVG  120
GEMAGATYNR KDKSLGLLCE NFLHLYGAGQ EELISLDEAA AKLGVERRRI YDIVNVLESV  180
EVVVRKAKNK YTWHGISRMP AALDRLWKEG KREFGEDLVL DGGDDDKDSP RGKAKIAELE  240
AERAKVKAEV NGDHGSAAKP EIDEGDDDED DVDDKSEGVK SEGDAESGGS GDAKSSGGSN  300
KDANKDAKSE EEDEDAAVAV AALTGENGAA SSADKSSGAK PSGAGGGTGD CRREKSLGLL  360
SQKFVQLFLV SRARVVSLES AARTLLGSCA DQAKLKTKVR RLYDIANILS SLRLIEKTHL  420
VDSRKPAFRW LGVEKELAAL QAAAAAGVKA EPGHPAAATA AAAAHAFAAH ATSGSSGAPA  480
TGAPAFNPQW FMPNVGGRAM TPPVPRVGSP FDAAASMAAA AAAANFAASV GVPERPGSSL  540
GKSKRGGGAS GGGGSPSRSD PSRSDPASDP GEIKRPRSAL GDAARSHLSA PTPQRAVAPG  600
LDALSAMAEI GSSGDVGVGG GSTGAGAAAL AAPVASRPLP GGFATAPSPA SSPGYAQMMA  660
AMAAAGIASP APAPDAAAQQ AATLAMLASM GPGGAEMMQA MFQQQQAQAQ SQAQAMMAAA  720
AAASAAGAPG AGGAPAAAAA AQAAQAYYQA MAAASFKPPP PGAGPAAPTP GAAPAGPGAL  780
PHGVVGPMGD YMEMWRKWSA QYAGGAPPGA PSASAPEANG AQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-181294243228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508040.10.0predicted protein
TrEMBLC1FGP30.0C1FGP3_MICCC; Uncharacterized protein
STRINGXP_002508040.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.15e-29DP-E2F-like 1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]