PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

61119

Common Name

MICPUN_61119

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 272aa MW: 29967.5 Da PI: 6.2714

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
61119	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	46.7	6.5e-15	10	63	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy W KYG K+v+g ++ +Y++C+++gC+++kkv r+a+ ++v eg+H+h 61119 10 EDGYVWHKYGAKNVRGRKV--GYFKCAHRGCEARKKVWRQANGDEAV--EREGTHTHA 63 7*************997..7*****************777765..579999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	13.012	4	65	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	9.4E-14	5	63	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-12	6	63	IPR003657	WRKY domain
SMART	SM00774	2.1E-11	9	64	IPR003657	WRKY domain
Pfam	PF03106	6.0E-12	10	62	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGRRRSDIEE DGYVWHKYGA KNVRGRKVGY FKCAHRGCEA RKKVWRQANG DEAVEREGTH 60 THAAGEAARV SEVVDEISTD NADAVPMPVN RAASGGSAGG GWGGADVPPG TSGIFGGFGL 120 GLPRELVRAA ADVSTERQEA RAAKSRPTNV PKATRDEPFE QDLRHERLIQ LVQDLANKSR 180 QKMTTVVALK EDSETCIETC IENTQEALRR LPKLPAEMET MTGTELRTWI ETLQESLQEP 240 FRRLQETLRR HLESLAALDD VMTRDGPFGD S*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001329	0.0	CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002504180.1	0.0	WRKY family transcription factor
TrEMBL	C1EBM1	0.0	C1EBM1_MICCC; WRKY family transcription factor
STRING	XP_002504180.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP469	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01970.1	2e-10	WRKY DNA-binding protein 45

Link Out ? help Back to Top
Phytozome	61119
Entrez Gene	8246045

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]