PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

61189

Common Name

MICPUN_61189

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

C2H2

Protein Properties

Length: 816aa MW: 84708.7 Da PI: 8.5178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
61189	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	192	214	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C k F + +L +H++t H 61189 192 SCKYCRKFFYDEGQLYTHMQTaH 214 6*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50089	9.863	5	46	IPR001841	Zinc finger, RING-type
SMART	SM00355	160	107	140	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.32	191	214	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	193	214	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	215	245	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	75	246	275	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50199	9.36	718	748	IPR001876	Zinc finger, RanBP2-type
Pfam	PF00641	2.3E-6	719	748	IPR001876	Zinc finger, RanBP2-type
SuperFamily	SSF90209	2.83E-5	719	746	IPR001876	Zinc finger, RanBP2-type
SMART	SM00547	0.0038	721	745	IPR001876	Zinc finger, RanBP2-type
PROSITE pattern	PS01358	0	723	742	IPR001876	Zinc finger, RanBP2-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence Send to blast
MEDCCAICAE PLTHVAYGPC GHRDACVECV ARLRFVMEDR RCVICQVPCE RVFATRHMGE 60 YTETIGADGF EQLPKRARAK QLHHDDKLDM FFDDDAVCGK VKSLRSLVCG ECVRDAGGDA 120 SAVSQHQSVK ALKAHLRERH GKFFCEVCLE GRKVFLSEQV LYTRTQLDKH RYGASADVDN 180 AFGQAGFKGH PSCKYCRKFF YDEGQLYTHM QTAHETCHIC RRQCPDKHVY YRDYEELERH 240 FRKDHHACLH PECLAKKFVV FTSAQELKNH EGLEHGRAMT KAERQAALRV DVGFTVGDNG 300 GGNQPGERTA VGISSRGGAN NATDVERMRA QARAHAQEQL RQARVNSVES AQLEAVLRAS 360 REESELPRVA SAEDFPDLAS NSRGGGGGGG GLIGGGWAGR AGSGRSSPGL SASGGSVGRN 420 LDDAEAFPTL GGANPNRGLK KQPRHMQPRG GNPAGSAKVP APVPARAAEV LAARLRGLAN 480 AGGGGGGGVG SFVGGSNPPS LASDEEHFPT LGPSRPNVQS SFAAPPGFNA DGEATARPLP 540 ARDVSIGGGG FERVASKRGK GRWSAADGGL ATSALNPPPS RQVSKKAQAK TEEDASLAKE 600 AADAEVAARS DALVARVRRT LDAKGGSFNS FASLSSQFKS GQCSGASYVA KLRVMGLDLA 660 IVNELAALMP DGDKRDELER AAAAAARLMG GGVGGGGGGA GGDSIGAAAA IMFGAGKRDG 720 NAWDCPACTY HNAGGNVRCD VCDGLRPGAA VGPVVGGGAS SSGGGGAVSG GGGGGGKKGK 780 VKGRKVSLTA VGGGGVRGID EIVDPGRSSR SAWGA*

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence Send to blast

MEDCCAICAE PLTHVAYGPC GHRDACVECV ARLRFVMEDR RCVICQVPCE RVFATRHMGE  60
YTETIGADGF EQLPKRARAK QLHHDDKLDM FFDDDAVCGK VKSLRSLVCG ECVRDAGGDA  120
SAVSQHQSVK ALKAHLRERH GKFFCEVCLE GRKVFLSEQV LYTRTQLDKH RYGASADVDN  180
AFGQAGFKGH PSCKYCRKFF YDEGQLYTHM QTAHETCHIC RRQCPDKHVY YRDYEELERH  240
FRKDHHACLH PECLAKKFVV FTSAQELKNH EGLEHGRAMT KAERQAALRV DVGFTVGDNG  300
GGNQPGERTA VGISSRGGAN NATDVERMRA QARAHAQEQL RQARVNSVES AQLEAVLRAS  360
REESELPRVA SAEDFPDLAS NSRGGGGGGG GLIGGGWAGR AGSGRSSPGL SASGGSVGRN  420
LDDAEAFPTL GGANPNRGLK KQPRHMQPRG GNPAGSAKVP APVPARAAEV LAARLRGLAN  480
AGGGGGGGVG SFVGGSNPPS LASDEEHFPT LGPSRPNVQS SFAAPPGFNA DGEATARPLP  540
ARDVSIGGGG FERVASKRGK GRWSAADGGL ATSALNPPPS RQVSKKAQAK TEEDASLAKE  600
AADAEVAARS DALVARVRRT LDAKGGSFNS FASLSSQFKS GQCSGASYVA KLRVMGLDLA  660
IVNELAALMP DGDKRDELER AAAAAARLMG GGVGGGGGGA GGDSIGAAAA IMFGAGKRDG  720
NAWDCPACTY HNAGGNVRCD VCDGLRPGAA VGPVVGGGAS SSGGGGAVSG GGGGGGKKGK  780
VKGRKVSLTA VGGGGVRGID EIVDPGRSSR SAWGA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001329	0.0	CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002504523.1	0.0	predicted protein
TrEMBL	C1EBU1	0.0	C1EBU1_MICCC; Uncharacterized protein
STRING	XP_002504523.1	0.0	(Micromonas sp. RCC299)

Link Out ? help Back to Top
Phytozome	61189
Entrez Gene	8246387

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]