PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 61442
Common NameMICPUN_61442
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 231aa    MW: 24656.3 Da    PI: 4.7408
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
61442genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08169214147
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eEdel+++  + +G +  +W+tI++  g  R+  + k+rwq +
            61442 169 RVRWTPEEDELIIRM-RVHGDRsiDWNTISAATG--RSKQSAKNRWQYV 214
                      78************7.89**99***********8..***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.36E-9159219IPR009057Homeodomain-like
PROSITE profilePS5129411.175164219IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-9168218IPR009057Homeodomain-like
SMARTSM007173.0E-4168217IPR001005SANT/Myb domain
CDDcd001672.37E-6171215No hitNo description
PfamPF139212.4E-6172217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAAERPRRFA AQVPASPAKV SRAEAQIEQA AAERVNLSAY PKDHPIWQDS HFCPDGPDAM  60
FPDAEEAFAA AAASLGFTTQ DGDEGNTTQE DGRDTSEAGR DASSEPFSDN GWATIAALAG  120
TPLAAGGTAM STPSTSAKPS VAFAIDTPVG LPDLDAMMNT PVMDGSKDRV RWTPEEDELI  180
IRMRVHGDRS IDWNTISAAT GRSKQSAKNR WQYVLKKRYP EVPAGRVHGI *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013290.0CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504658.11e-168predicted protein
TrEMBLC1ECJ71e-167C1ECJ7_MICCC; Uncharacterized protein
STRINGXP_002504658.11e-168(Micromonas sp. RCC299)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]