PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62104
Common NameMICPUN_62104
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 243aa    MW: 26932.1 Da    PI: 6.01
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62104genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.2e-09218240326
              S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
              ++ C++f+r G C +G rCkF+H+
    62104 218 RAVCNDFLR-GRCDRGKRCKFSHD 240
              789******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577563.14E-5430IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.4E-4422IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.109722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5010315.45215242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5215240IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5216241IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6218240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6220241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTSRQICMTC GTRGHGASQC PERTRLHREH VLGTSEMPDV TAGALRRGPG GLQVLSYAKD  60
HTSALFQQAK EREERLREER ASRRDQEAPP NANSQPAKSG MSMVRLVKRK GVGVAEPGKK  120
AKLQVVLEDQ FKDDEDDEEE GLGGLLGDYD SDDDAEEEEP AKQQQKEDKE EKKDDKPKVK  180
LPAPSELGVL DLPDWTDEVH LGKVEEQKVS AKPVSKARAV CNDFLRGRCD RGKRCKFSHD  240
VS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015760.0CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508853.11e-177predicted protein
TrEMBLC1FHJ41e-175C1FHJ4_MICCC; Uncharacterized protein
STRINGXP_002508853.11e-176(Micromonas sp. RCC299)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]