PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

62431

Common Name

MICPUN_62431

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 137aa MW: 16050.3 Da PI: 8.3257

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
62431	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.3	2.2e-07	87	131	12	55
HHHHHHHHHHSSS--HHHHHHHHHHCTS-H.HHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLte.rqVkvWFqNrRake 55 + L++++e+++yp++e++eeLA++ g ++ +++ ++F+N k+ 62431 87 FKKLKAYYEEEPYPTQERMEELAEEFGAPDwTKIENFFKNMQLKH 131 578***********************8876589999999987776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	1.10E-5	83	133	No hit	No description
SuperFamily	SSF46689	6.42E-6	86	134	IPR009057	Homeodomain-like
Pfam	PF00046	5.6E-5	87	131	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-6	87	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.535	90	134	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MDPTAPSITF FDKDTGKGRA TYIGSLQPAR MFPPTVGIWF TNQGDEVCAR IDPRRSRDTP 60 RPRPIRCPRI CPEICFPTHP HSRRQVFKKL KAYYEEEPYP TQERMEELAE EFGAPDWTKI 120 ENFFKNMQLK HQEQFQ*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001330	0.0	CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002505185.1	2e-98	predicted protein
TrEMBL	C1EDY2	5e-97	C1EDY2_MICCC; Uncharacterized protein
STRING	XP_002505185.1	8e-98	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12965	3	3

Link Out ? help Back to Top
Phytozome	62431
Entrez Gene	8247607

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]