PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 6282
Common NameSELMODRAFT_6282, SELMODRAFT_6284
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 116aa    MW: 13849.8 Da    PI: 11.0657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
6282genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-18449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
             6282  4 RGHWRPSEDEKLRELVALHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 49
                     899*****************************.***********996 PP
2Myb_DNA-binding62.49.2e-205699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r+++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
             6282 56 RQPFSEEEEERLLAAHTFHGNK-WALIARLFP-GRTDNAVKNHWHV 99
                     89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.134154IPR017930Myb domain
SMARTSM007177.3E-15352IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-29397IPR009057Homeodomain-like
PfamPF002498.1E-18449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-27557IPR009057Homeodomain-like
CDDcd001671.10E-12748No hitNo description
SMARTSM007179.0E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129420.44855105IPR017930Myb domain
PfamPF002498.6E-165698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2258104IPR009057Homeodomain-like
CDDcd001675.26E-66798No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
LCPRGHWRPS EDEKLRELVA LHGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRQPFS  60
EEEEERLLAA HTFHGNKWAL IARLFPGRTD NAVKNHWHVI MARKFRERSK LYGRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-3241057108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002979626.26e-81uncharacterized protein LOC9634522
RefseqXP_024540378.16e-81uncharacterized protein LOC9634522
SwissprotQ9SEZ45e-65MY105_ARATH; Transcription factor MYB105
TrEMBLD8S2T51e-79D8S2T5_SELML; Uncharacterized protein (Fragment)
STRINGEFJ195152e-80(Selaginella moellendorffii)
STRINGEFJ209862e-80(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-67myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]