PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62992
Common NameMICPUN_62992
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C2H2
Protein Properties Length: 595aa    MW: 62769.3 Da    PI: 9.4295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62992genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0585108323
              ET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
              C+   Cgk F  + +L +H r+ H
    62992  85 CThpGCGKEFAWQQDLAKHVRRyH 108
              77779****************999 PP
2zf-C2H213.60.0002115139123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              + C+   C+k F  + +L+ H rtH
    62992 115 FACThdGCDKKFYERKLLVAHERTH 139
              679999******************9 PP
3zf-C2H2140.00015145170123
              EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
              + C+   Cgk F+ +  L  H++  H
    62992 145 FACKhpGCGKAFRARNALAYHQKAlH 170
              679999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00283108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.71383113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-884109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028085108IPR007087Zinc finger, C2H2
SuperFamilySSF576675.94E-787139No hitNo description
Gene3DG3DSA:3.30.160.601.1E-8115138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012115139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.066115144IPR007087Zinc finger, C2H2
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.47E-12126185No hitNo description
Gene3DG3DSA:3.30.160.604.6E-13139167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028145170IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302145170IPR007087Zinc finger, C2H2
PROSITE patternPS000280147170IPR007087Zinc finger, C2H2
SMARTSM003550.16176200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDFRQNPGFA PGQAVFLPPG SWPGSGLPVA QFQSDGRGGM MGMTAGLQVA MGQNQSMMMA  60
APPQGPAVAQ APGGHAHHPK PKVTCTHPGC GKEFAWQQDL AKHVRRYHSG EEPRFACTHD  120
GCDKKFYERK LLVAHERTHT DERPFACKHP GCGKAFRARN ALAYHQKALH ESGVVLRCTE  180
DGCRFTTRKA EALATHKLRH QQRAAAKVWK QQKKGEVQAA VKTAKEELRT KSAELVNVQK  240
QLAQEQKAHA KALKELNALK ATHAKMKRKV TASATELESL RQQKRARTGG GKDAGAVGGK  300
TKATGNGAGG GGGGGVGGER NAPALMPEIV LLDGPTGKMP MLAMDAPAAL TAAASSARAR  360
ESDAAAARQL VDGVVVPGAV AGFGYPGGVG TRVAPPPPLA TTLNVNGTMR RLQPVCAQAL  420
PWSTSFIGCP GIKCDDGHDF TELFLEDGSR NAGNRRTTPL EVEHPKDVAA FHARSTNCPW  480
AKPNLQVTLE KASDPMALHA LLNEIAPKKA LKVKRVDGQC AACYAAHVAL AARLRAKHNA  540
KPAGEPAADE VDAADEVDGL VEDALVDGDG DGDGDDDDAV AEETPRAVRS RRGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A6e-15752034154PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015770.0CP001577.1 Micromonas sp. RCC299 chromosome 12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509335.10.0predicted protein
TrEMBLC1FJG90.0C1FJG9_MICCC; Uncharacterized protein
STRINGXP_002509335.10.0(Micromonas sp. RCC299)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-13C2H2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]