PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

63410

Common Name

MICPUN_63410

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 246aa MW: 26344.5 Da PI: 4.8588

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
63410	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.1	1.7e-17	98	175	19	96
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 lPlar+k+i+k d++vk + +a ++k elfi l s+ + nkr+t+k d++ v r + +fl d+v 63410 98 LGLPLARVKRIMKLDKEVKNMQVDASKCVAKCAELFIESLVEGSFRSMKANKRKTIKYGDVEHHVLRKQRLEFLHDHV 175 569*************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00398	1.3E-4	3	77	IPR009071	High mobility group box domain
PROSITE profile	PS50118	11.078	3	76	IPR009071	High mobility group box domain
CDD	cd00084	5.91E-8	4	73	No hit	No description
Pfam	PF00505	1.3E-7	5	74	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.7E-12	5	73	IPR009071	High mobility group box domain
SuperFamily	SSF47095	5.5E-11	5	74	IPR009071	High mobility group box domain
SuperFamily	SSF47113	1.84E-17	97	183	IPR009072	Histone-fold
Pfam	PF00808	5.0E-17	100	160	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.2E-21	100	175	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGGPKKMAPY LVFANDKRET AKELLIGEGN EKPTMGEIAK RVGVLWNQLD DAAKQVYKDK 60 ADELNAKAAK EYEEAGGDAA ADGADGDGDD GEKGAEELGL PLARVKRIMK LDKEVKNMQV 120 DASKCVAKCA ELFIESLVEG SFRSMKANKR KTIKYGDVEH HVLRKQRLEF LHDHVWAFRP 180 EEAQVGGAKG GKGGGKENDG DDDDVDGDDD TTPAKASPEA PPGARQVTDF FKKAAAEPEG 240 VATGA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001331	0.0	CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002505654.1	1e-176	predicted protein
TrEMBL	C1EFU7	1e-175	C1EFU7_MICCC; Uncharacterized protein
STRING	XP_002505654.1	1e-176	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4674	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	8e-12	nuclear factor Y, subunit C3

Link Out ? help Back to Top
Phytozome	63410
Entrez Gene	8248334

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]