PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 64358
Common NameMICPUN_64358
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 299aa    MW: 31610.9 Da    PI: 9.3304
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
64358genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.6e-11264285527
              --SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
              +C ff++ G CkyGd+CkFaH+p
    64358 264 PCVFFQQ-GSCKYGDTCKFAHVP 285
              8999999.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.586259286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6260283IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-7260285IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8264285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-7264283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDLDAMITEA EADKEEKKAR RVVVKRPARG GRGGGGGGDD LRSRLRGSDD YHGGRRGGGD  60
RWEHDRHDDR RGGGRGRAGG RGRRDDYDGG DRDRPQAETL DGWTVSDRVD ARTGKNFFAG  120
KCEGCGVDTE VPFRPVKGGN PPVCLDCNTS LKDAQGGGGP DRGGRGGRGR RGDPYGPSPK  180
MMMQQMQMMQ MQMMAMAQHM QAGGGRGGRG GRGGRGGRGA GGGRGSNVWT PDMGTSEPKP  240
ESGVAKGGKT WVREEAAADM SSTPCVFFQQ GSCKYGDTCK FAHVPARDND GNVDMGEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215222GGRGAGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013330.0CP001333.1 Micromonas sp. RCC299 chromosome 15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506491.10.0predicted protein
TrEMBLC1EHV50.0C1EHV5_MICCC; Uncharacterized protein
STRINGXP_002506491.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP647955
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]