PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

64370

Common Name

MICPUN_64370

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

C2H2

Protein Properties

Length: 577aa MW: 62381.7 Da PI: 5.1798

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
64370	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	24	46	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + s+L++H H 64370 24 FRCARCGETFADASSLVSHKVWH 46 89*****************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.074	24	51	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	26	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MTAAAGVPPA GAARIVRVEE RARFRCARCG ETFADASSLV SHKVWHRKRD ASNAPVEEEH 60 HRDGGVTGAR GGPTRGHPSG VRRGNDVAGA LTHAQRDLLR EGEQLMRRLD TVRASTSFSS 120 PSSSSSMGRL HATSRTSLAQ RLRAEKEERA RRDGIIGWTS PTRSPTREPR QQQPGTRPSA 180 GGFDEEKSHE KGEDDKALET VAPPRRPVAP RYGSEVPDEP AARPIRGSSP HEAETIRYRD 240 DDDDDDASPS SASSSTASFD STIDAASAEG TAPSADDGSL FRPACAPIAL RKAPGQIRRE 300 EAAARREAAR AAARDAKTKQ RLENQNQNQN GEARPGTRED AVRPTQPSLP RWQGGTVIRR 360 DRTGGGGGGG GIRSGDLTKG DDGKETEDDP RLNDPRWGDP GGRLLDRARA AAVKIATREL 420 AREAKRLALK EKGAIDPVGA RKGGRDRATA EGGESPVAIF DESGDDSTDE ARGSGVGDFL 480 ARYRALVRER DVGVLREREE REARAREEEE WRSSRSDEED EDEDEGEGGR DGRALRAVAS 540 NEEDESFVEE LTPEEEDELA EFERLERQVA AEVGAA*

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MTAAAGVPPA GAARIVRVEE RARFRCARCG ETFADASSLV SHKVWHRKRD ASNAPVEEEH  60
HRDGGVTGAR GGPTRGHPSG VRRGNDVAGA LTHAQRDLLR EGEQLMRRLD TVRASTSFSS  120
PSSSSSMGRL HATSRTSLAQ RLRAEKEERA RRDGIIGWTS PTRSPTREPR QQQPGTRPSA  180
GGFDEEKSHE KGEDDKALET VAPPRRPVAP RYGSEVPDEP AARPIRGSSP HEAETIRYRD  240
DDDDDDASPS SASSSTASFD STIDAASAEG TAPSADDGSL FRPACAPIAL RKAPGQIRRE  300
EAAARREAAR AAARDAKTKQ RLENQNQNQN GEARPGTRED AVRPTQPSLP RWQGGTVIRR  360
DRTGGGGGGG GIRSGDLTKG DDGKETEDDP RLNDPRWGDP GGRLLDRARA AAVKIATREL  420
AREAKRLALK EKGAIDPVGA RKGGRDRATA EGGESPVAIF DESGDDSTDE ARGSGVGDFL  480
ARYRALVRER DVGVLREREE REARAREEEE WRSSRSDEED EDEDEGEGGR DGRALRAVAS  540
NEEDESFVEE LTPEEEDELA EFERLERQVA AEVGAA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001333	0.0	CP001333.1 Micromonas sp. RCC299 chromosome 15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002506497.1	0.0	predicted protein
TrEMBL	C1EHW6	0.0	C1EHW6_MICCC; Uncharacterized protein
STRING	XP_002506497.1	0.0	(Micromonas sp. RCC299)

Link Out ? help Back to Top
Phytozome	64370
Entrez Gene	8249428

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]